BAC Information

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BAC

Clone NameMSMg01-047D22
Chromosome12 (Build37)
Map Location 83,499,369 - 83,499,778
singlet/doubletsinglet
Overlap geneSipa1l1
Upstream geneHspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
Downstream geneLOC432675, EG666911, Rgs6, Dpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047D22.T7 (MSMg01no047_d22.b1)MSMg01-047D22.TJ (MSMg01no047_d22.g1)
ACCAG277401AG277402
length698820
length of high quality
(start - end)
410 (123 - 532)44 (75 - 118)
definitionCHROMAT_FILE: MSMg01no047_d22.b1 PHD_FILE: MSMg01no047_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:33 2005CHROMAT_FILE: MSMg01no047_d22.g1 PHD_FILE: MSMg01no047_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCAGG
GCATCCCGGGCTACACAGAGAAACCCTGATTGGAAAAAATCAAATTAAAA
AAGAAGAAAAGAGAACCCAAGTTGTATATTTTTAGCCACTACTTTCTAAG
AATTTGTCTTAAATTTTGTAGTTAAAGCCAAAACATAACTGGGTGATGGT
GGCACACGCCTTTAATTCCAGCTCTCAGGAGTCAGAAGCAGGTGGATCTC
TGTGAGTTTCAGGACAGCCTGGTCTACAAAGCAAGTTCCAGGAGAGCCAG
GGCTGTAAGCAGAGAAACCCTGTCTTCTTGCTAAAAAATAAATGCAAAAT
ACACACAACATCTAATTAACTAACTAATAATTAATCATAAATAAATACTG
ATAATTAATCAAACCAAACCATAGTTCTTTTTCTCCCTAAAATGACTAGT
CCTAGGTCTGAGCACTCATGGACTTATGATTAGCAGATGGTAGACTATAA
ATCATTATTGTGGGTTATTTGTGCCCCTTATAGACTTAAGCGAACTTCAG
TTAAAAAATCAGTCTTTATTCATAATAGCATTTATTTATGCCATTTATCA
GGTATGCAACCTGGCGGTCGCGGGCCTGTGTCGTAATATTCTGGGGCCAT
TTATTCTGAATCGGCTAAGCAACACTCCTTTATATAGCTGAGCTACAN
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAAATTATTACTTCCGGGCTGCGG
ATGTAACTCAGTGGTACATTGCCTGCCGTGTGTGTGTGTGTGTGTGTGTG
TGTGCGTGTGTGTGTGCTCCTTCCAACCCATTCTTATCTTTCATTTCCTC
CTTTTCCCTTCCTTTTCTTTCCCCCCTTTTCTCCTCTCCTCCTTCCCCCT
CCCTTCTCTCTTCTATACCCCCCCACCCCTCTCTTATTCTTCTACATCCC
TTCCCTCTCACTTCCCCCCTCCACTTCTATTTTTTCTTTTCTACCTTCCT
ATTCTACCCCCTATTACCTTCTTATTTTTTTTTTTTTTTCCCCCCCCCCC
TCTTTTTATCATCTCTCTATATTCTTTTCTTCCTATCATTCCCCCCCCCT
ATAAAACAAAATCTACCCTCCCCCCTTCTTTCGTTTTCCCCCCCTCTTCC
TCCTTCTTTACCCTCCCCTTTTTTTCTCCCTTCTCTTTCCTCCACTTCTC
TCCCCCTCTTATTTCTCATTCCCTTTTCTTCCTTCCCCCCTCTATTCTCC
TTCCCTCCCCCCCCTTATTCATCTCTTTATTTTTCTCCTCTTCACTCTTC
TCCTCCCCCTTTTTTTTTTCTCCTCTCTTTTCTTTCCACCCCTCCTTCAC
TCCCTTATCACTACTCTTCCCCCCCTTTTCTTCCCCCCCTCAATATCCCC
CTCCTCCCCTCTTCTCCACTCTTCATTAACCTCCACCTCACCCCCAATCT
TCTCTCCCCTACCTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_d22.b1 MSMg01no047_d22.b1 CHROMAT_FILE:
MSMg01no047_d22.b1 PHD_FILE: MSMg01no047_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:33 2005
         (410 letters)



>mm_chr12_83499171_83499980
          Length = 810

 Score =  743 bits (384), Expect = 0.0
 Identities = 403/410 (98%), Gaps = 2/410 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatatttttagccactactttctaagaatttgtcttaaattttgtagttaaagccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgtatatttttagccactactttctaagaatttgtcttaaattttgtagttaaagccaaa 258

                                                                       
Query: 61  acataactgggtgatggtggcacacgcctttaattccagctctcaggagtcagaagcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acataactgggtgatggtggcacacgcctttaattccagctctcaggagtcagaagcagg 318

                                                                       
Query: 121 tggatctctgtgagtttcaggacagcctggtctacaaagcaagttccaggagagccaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 319 tggatctctgtgagtttcaggacagcctggtctacaaagcaagttccaggatagccagag 378

                                                                       
Query: 181 ctgtaagcagagaaaccctgtcttcttgctaaaaaataaa--tgcaaaatacacacaaca 238
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 379 ctgtaagcagagaaaccctgtcttcttgctaaaaaataaaaatgcaaaatacacacaaca 438

                                                                       
Query: 239 tctaattaactaactaataattaatcataaataaatactgataattaatcaaaccaaacc 298
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 439 tctaattaattaactaataattaatcataaataaatactgataattaatctaaccaaacc 498

                                                                       
Query: 299 atagttctttttctccctaaaatgactagtcctaggtctgagcactcatggacttatgat 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 499 atagttctttttctccctaaaatgactagtcctaggtctgagcactcatggatttatgat 558

                                                             
Query: 359 tagcagatggtagactataaatcattattgtgggttatttgtgcccctta 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagcagatggtagactataaatcattattgtgggttatttgtgcccctta 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)