BAC Information

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BAC

Clone NameMSMg01-047N23
Chromosome12 (Build37)
Map Location 61,613,648 - 61,613,935
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047N23.T7 (MSMg01no047_n23.b1)MSMg01-047N23.TJ (MSMg01no047_n23.g1)
ACCAG277788AG277789
length707704
length of high quality
(start - end)
660 (46 - 705)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no047_n23.b1 PHD_FILE: MSMg01no047_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:17 2005CHROMAT_FILE: MSMg01no047_n23.g1 PHD_FILE: MSMg01no047_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAAAATACTTGCAACCCAAATCCAAGAATATGTCAAGAAGATC
ATCCACCATGATCAAGTATGCTTCAGCCCAAAGATGTAGGGATAGTTCAA
TATATGAAAATCAATAAATCTAATCCATCATAGAAACAAATTTAAAAAAA
CACTTCATGATTATCTCATAAGATTCAGAAAAGACCTTTGATTAACTCAA
ACAACCCTTCATAACAAAAGTCTTGGTGAGATTTGAGGGACAGAACTAAA
CATAAAATAGGCAGTCAACAAGACTTCAGCTAACACCAAATTAAAAGGAG
AGAAACTCAAAACACTTCTACTAAAATCAGAAACAAAACAATGTTTTCCA
CTCTATACATCTATTCAATATAGTTTTTGAAGTTTTAAGTAATTAGAAAA
TTGAAGGAGATCAGAGGGTTACAGAATAGAAGGCAGAAGTCAAAGTTTCA
TTATTTACAGATGGCATTATGGTACATAAGTGACCCCAAATTTCTACCAG
AGAACTCTTATAACTAATAACACTTTCAATAAAGTAAATGGATAGAAAAC
TAACTTAAAAAATCAGTTGTCGTCCTATATACAAATAAAACTGGCTGAGA
AAAAAATCAGGAAAACACAACACTTTTCAAAAAAGCCTGAAATAATATAT
AATACCN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTGTGTTGATCTTCTGATTGGGT
CAAACAAATTCCAGAGTAGGTAGTCCTGGCTGTTTGCCTAAAAGGAGAAG
GATCCATGAGAAAAAAAGGCAAAGGCAAAACCTTAACCCCAATGAAGAGA
GTAAGCACCCTGGCCCCAAATCAGGGTAGGAAGGAAGACTCAGTGACTAT
GGGCTTTTCCAAGAGATCTAGGTTTAATTTACAAACCTCAGCAACTCTAG
TTCCAGGGGATTGAAGATGCCCCTTTCTTGCTTCGGAGCTCACTAGGCAT
GCACAAATATGCATATAGTCAAAATACCCATACACTTAACCATAAATAAA
TCTTAAAAAAAAAAAAAACCCCAGGAAACCATGAATATCCATGTGGAGGA
ATGTCTGTGTGGTTGTCTTCCTTTGGACCACAGATCTCAATCCTTTTATT
ATTCCCTAAGAAAACACAGGGGCAGGGCCCTCCATCCTTTCGCCCCACCC
CTTCATATCTTCCTGAGCTCAAGTGTTTAAAGATTATGTGATTGTGCTTA
GAAGAAACATAGTTACTTTATGCAAGGAAACTAGGCTATAATGGAAAAGC
ATCTGAATTTTCTAAATTATGAAGATATTTTAATACCTTTAAAGTTATGA
TTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_n23.g1 MSMg01no047_n23.g1 CHROMAT_FILE:
MSMg01no047_n23.g1 PHD_FILE: MSMg01no047_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:17 2005
         (287 letters)



>mm_chr12_61613448_61614135
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%), Gaps = 1/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgtgttgatcttctgattgggtcaaacaaattccagagtaggtagtcctggctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgtgttgatcttctgattgggtcaaacaaattccagagtaggtagtcctggctgtt 260

                                                                       
Query: 61  tgcctaaaaggagaaggatccatgagaaaaaaaggcaaaggcaaaaccttaaccccaatg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tgcctaaaaggagaaggatccatgagaaaaaagggcaaaggcaaaaccttaaccccaatg 320

                                                                       
Query: 121 aagagagtaagca-ccctggccccaaatcagggtaggaaggaagactcagtgactatggg 179
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagagtaagcacccccggccccaaatcagggtaggaaggaagactcagtgactatggg 380

                                                                       
Query: 180 cttttccaagagatctaggtttaatttacaaacctcagcaactctagttccaggggattg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttccaagagatctaggtttaatttacaaacctcagcaactctagttccaggggattg 440

                                                           
Query: 240 aagatgcccctttcttgcttcggagctcactaggcatgcacaaatatg 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatgcccctttcttgcttcggagctcactaggcatgcacaaatatg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)