BAC Information

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BAC

Clone NameMSMg01-048A07
Chromosome12 (Build37)
Map Location 6,502,537 - 6,502,747
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
Downstream geneLOC100042118, LOC668380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048A07.T7 (MSMg01no048_a07.b1)MSMg01-048A07.TJ (MSMg01no048_a07.g1)
ACCAG277892AG277893
length1,2271,355
length of high quality
(start - end)
234 (135 - 368)59 (69 - 127)
definitionCHROMAT_FILE: MSMg01no048_a07.b1 PHD_FILE: MSMg01no048_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:29 2005CHROMAT_FILE: MSMg01no048_a07.g1 PHD_FILE: MSMg01no048_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACA
AATGATCTTAAAACCCTTACAAATGAATTTGATACCATTGATTTATCTGA
AACTACTATACTGACCATTCTGCCCCCCCCAACCAACAAAGATGATTTTC
AAATATGGTAAAAGAATGCAATGAATTAATGAACACAAAATTAGTAAAGC
ATAAACTTATGAAATTATTTTAGAGGGAATATTTCTTTGGTTTTTCAAAA
TAAATATGAAAAATTAAGTATCCCTCAGAGAGAATAATTGACTATAATGC
ACATATATGTGTATATATATACATATATATATATATATATTATAGTATGC
TGNAATTTCATTATTATATAATTATATCATACCTTCTCAACTACTTCCTT
TTTTTTTTCCATACTTACATCTCTAATGTATAATTCATATATATATACCC
CCCCTGATCCATTTATATTTTTTTCTATAATCTTGTATTTTTAAATTCTA
TTTTTTTTCATCTTCTTTTTTATATTATTATTTCCTTTTATTTTTTTTAT
TCTTTTTCTTTTCTATTTTTTTTTTTTTCATTCTCTATTTTTTTATTTTT
ATTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTAATTTTTTTTTTTATTTT
TCTTTTTTTTTCTTTTTTTTTTTAATATTTTTATTTTTATATATATTTTT
TATTTTTCTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTATACAT
TTTCTTTCTATTCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTCACA
TTCTTTTTTTTCTTTCCTTCTTCTTTTTTATTTAATTTATTTTTTTTATT
ACTTTAATTTTTTTTTTTTTTTTTTTTTTCTTTACTTCAACTTTTTCTAT
CTATCTTTTTTTTCTCTTCTTTTACTTTCCCTCTTATTTTATTTTTCATT
TTTTCTTACTTTTTTTTTTTTTTTTTCTCTTATTTTATTTAATTTTTATT
TATTTATTTTTTTATTTTTTTATTTTTTATTTTTTCATTTTATTTTTTTT
TTTTTCTCCTCATTTTCTTTTTTATTTTATTTTCCTTTCTTTTTTTACAT
TTTTTTTATTATATNTTTTTTCTTTTATCTTTTAATCTCTTCTTTTTTTT
TTCTTTCTTCTTTTATTTTTATCTTACACTTTTATATATTTATATTTCTT
ATTTTTTTTAATTCTTTATTTTCTCTT
TTTTTAGCGTTGGTANCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTTCTTCTTTGAAGGTCTGATAGCACTTT
GCATTAAACCCGTCTGGTCCTGGGTCCCCCCGCCCGCCAGACTATTGATG
ACTGTTTCTATATTTTTAGGGGAAATGGTATTGTTTTTTTTTTTTTTTTT
TNTTATTTTTTTTATTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTT
TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTATATTT
TTTTTTTTTTTTCTTTTTTTCTTTTTTTTTTTATTATTATTCTTTTTTTT
TTTTTTTTTTTTTTTTTTTTCGTTTTTTTTTTTTTTTCTATTATTTTATT
TTTTTTTTTTTTTACTTTCTTCTATTCTTTTTTTTTTTTTTTTTTTCATC
CTCTCCTTTTTTATTTTTTTTTTTTTTTTATTTCTTTTTTTTTCTTTTTT
TATTTTTTTTTTATTTTTATTTTCTTTTCTTTTCTTTCTTTTTATTTCTT
CTTTTTTTTTTTTTTTTTTTTTTTATTTTTGTTTTTTTTTTTTTCTTCTT
TTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTATTATTTCTTTTTTTTC
TTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTCTTTTTTTCCTATTATATTATTATTTTTGTTTTTTT
ATATTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATT
TTTTTATTTTTTTTTTTATTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTT
TTTTTTTTTTTTCATTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTATTTCTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTT
TTTTATTTTTATTTTTTTTTTTATTTTTTTTTTTATATTTTTTTTATTTT
TTTTTTTTTTTATTTCTTTTTTTTTTTTTTATTTTTTTCTTTTTTTTTTT
TTTTTTGTAATATTATGTTATTTTTTCTTTTTGTTTATTTTTGTATTTTA
TTTTTTTTTATTTTCTTTTTTTTATTTTTTTGTTTTGTTTATTTTTTTTA
TTTTCTTATTTTTTATTTTTGTTTTTTTTTTTTTATTTTTTGTTTTTATG
TTTTAATTTTTATTTTTTTTTTTATGTTTTTATATTTTTTTTTTTTTTTA
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_a07.b1 MSMg01no048_a07.b1 CHROMAT_FILE:
MSMg01no048_a07.b1 PHD_FILE: MSMg01no048_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:29 2005
         (234 letters)



>mm_chr12_6502380_6503013
          Length = 634

 Score =  393 bits (203), Expect = e-114
 Identities = 209/211 (99%), Gaps = 1/211 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaagatgattttcaaatatggtaaaagaatgcaatgaattaatgaacacaaaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aacaaagatgattttcaaatatggtaaaagaatgcaatgaattaatgaacacaaaattag 309

                                                                       
Query: 61  taaagcataaacttatgaaattattttagagggaatatttctttggtttttcaaaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taaagcataaacttatgaaattattttagagggaatatttctttggtttttcaaaataaa 249

                                                                       
Query: 121 tatgaaaaattaagtatccctcagagagaataattgactataatgcacatatatgtgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 248 tatgaaaaattaagtatccctcagagagaataattgactataatgcacatataagtgtat 189

                                          
Query: 181 atatatacatatatatatatatatat-tata 210
           |||||||||||||||||||||||||| ||||
Sbjct: 188 atatatacatatatatatatatatatatata 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)