BAC Information

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BAC

Clone NameMSMg01-048A14
Chromosome12 (Build37)
Map Location 60,900,817 - 60,901,345
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048A14.T7 (MSMg01no048_a14.b1)MSMg01-048A14.TJ (MSMg01no048_a14.g1)
ACCAG277905AG277906
length1,2891,263
length of high quality
(start - end)		681 (86 - 766)667 (81 - 747)
definitionCHROMAT_FILE: MSMg01no048_a14.b1 PHD_FILE: MSMg01no048_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:31 2005CHROMAT_FILE: MSMg01no048_a14.g1 PHD_FILE: MSMg01no048_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTNNNNACAGTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCTGATTATGTTGGCCCGATTACTGGCACACAGGTCTTAT
CTAGGCGACAATATAGTCGAGATTTCATGGGTGCACCATCCCTGTCTTTT
GTAGAATGACTATTGCACAGCTGACATCTTGATCTTCTGACTCTTAGAGT
CTTCCTGACTCTTCTTCCATAAAACTCTGTGAACCTTATATGTAGGCATT
GCATTGAAGATGTGTCAGTTGAGGCTGGTATGGTGGTTTGAATATGCTTG
ACCCAGGGAGAGGCACTATTAAGAGGTCTTGTTGGAGTAGGTGTAGCCTT
GTTGGAGGAAATGTGCCACTGTGGGCATAGGCTTTAAGACCCTCATCCTA
GTTCCTGGTAAGCCAATCTTCTCCTGTTTGCCTTCAGAACAAGATTTAGA
ACTCTCAGCTCCTTCTGCATCCATGCCTACTGGATGCTGCCATGCTCCTG
CCTTAGTGATAATGGGCTGAACTTTTGAACCTGTAAGCCAGCTTCCATTA
AATGCTGTCCTTATAAGTGTTGCTTTAGTCATGGTGTCTGTTTACAGTAG
TAAAACCCTAACTAAGACAGCTGGGCACGCCATGGTCAGTTGATCTCTGC
ATTTTGACTAGCTCTGCTTTCTGAAATGATATCCACCTGATGCAAAAAGA
AGCTTCTTTGATTAGGAGAAAGAGCTACAATTATCNACGAATAGAAGGAT
GAGTATTGAGATTGCCGTTAACAGTTATACTGGGTTAGGGAATTGGCAGG
GGTGGTATGTCCTCTAGAGTTCACAACCTCACCAGCCACGGTTTTACGTG
CAGGCATAAACCCACTTCTATTTGGTAGACCAAGATAGTCCAATTATATT
CTCTTGCCATGCTGGTTGCTGTTCTGTGGGTCATTATCTTCCCATCTTGA
ATAAATTTCTGGGCCTTTTACCCCCTGTAAATTTTTCTTACTCTTTCTTG
GAGCATGTTTTATTCTTTTCTAAAGTTTTTTTTTATATTTTTTTCTACCT
TCCTTTTTGTCTGTTATATCTTCTTTTTTTATTTCTTTATTTTTTTCTTC
TTCTTTCTCCTCTTTTGTAAGATTCTTTTTATTTTTCTCTTTCTCCTTCT
CTTTTTTTTTATTTTTTTTTTGTATCTTTTCTACTTTTCTNTCTATATGT
ATATATTTTCCTTTCTTTCTATTCTTTGTTTCTCTTCTTTATTTCCTTTT
TTCTACTTCTTTCATTTATTTTCTCTCTCTTTCTTTTTT

TTTNNTTTAGAATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTTAGTTCAGCTCTGAGCCCCATTTTTTA
ATGGGGTTATCTGATTTTCTGGAGTCCACCTTCTTAAGTTCTTTATATAT
ATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGGCCTGTTCCATTTCTAAGCGCCCAGTCACAGCCTGCTG
CTGACCAGGCATTTCCTTAGTGGTCCTCTAGGGAAAGCATTGGCCCCATA
ACCATTTAATTCTCTCCAATCCTCATACTTTCTCAATTGATGTGTTTACC
TCTTTTAGTTACTTTCTGGATAAAATACAAATGATTTAAAACAATTGATT
TGTGAACCTGAAATGGACAACGTCATGAGTTACTGGAATCTAAGTATTTA
ACTAATGCCTTCTAATATATTGTTAACTGGCTATGCAGAAACAACAGGTT
AGCTAAGTTCAAATTCTAGCAATTTAAAGTTTAAGACTAAATAAACTACA
GAGTGTTGATTATGTAGAATACAGACATGTTTTAAGCCAGAAATATATCT
AGGCTATCTAGTATCTATGATTTTTAATTCCATAACTTGCCTGAGAGATT
TTTTTTAAATATATATCAACCAAGCAACAAACCCAAATAAAGAAGCCTTT
GCTGGAAATTTTTTTTAAATCTATATTTTCCTAAGAATGTTCCATTTATT
CTATCTTTTTAAATAACTCCAAGATTATACAAGAAGCTAATGTTTTCAAT
GACTTTTAGCACAAAGTATTAAAATAGAAGAGAGGGGCTTTTGAAAGATA
AAAAAGCCCACTTATCTTCCGCTTTGTAAGGGAGGGCAATCTAAGAGGAG
AGACAATGTTATAAAGAAAATGTTGTTGGTTTGTTTAAATCCTTCTTATA
AAACTTTTTCCAGATTGTTCCATTTTGTCTCCGGGACCTCCTTGTGGTTC
CTACGGTCTGTGGTCTAAAAAAATGTTTTTTCTAATTCCCCCCCTCTAAT
TTTTATTTTTCTTTTTTTTCCTTTTTCATAAAATTTGGGTCTTTTCTTCT
TTTTCTATTTCTATTTTTTAATTTGTTATTTTTTTTCTTTATTTTCTATT
TTTATAATTTTTTTTACTTATATTNTTATTTTCTTTGTATCTCTATCTTT
TTCATTTCATATATTTTTTTCTTAATTTCTTTTTTTTTTTTTATCTTTCT
TTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_a14.g1 MSMg01no048_a14.g1 CHROMAT_FILE:
MSMg01no048_a14.g1 PHD_FILE: MSMg01no048_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:31 2005
         (667 letters)



>mm_chr12_60900478_60901542
          Length = 1065

 Score =  926 bits (479), Expect = 0.0
 Identities = 518/531 (97%), Gaps = 2/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 137 gttccatttctaagcgcccagtcacagcctgctgctgaccaggcatttccttagtggtcc 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gttccatttctaagcgcccagtcacagcctgctgctgaccaggcatttccttagtggtcc 809

                                                                       
Query: 197 tctagggaaagcattggccccataaccatttaattctctccaatcctcatactttctcaa 256
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tctagggaaagcaatggccccataaccatttaattctctccaatcctcatactttctcaa 749

                                                                       
Query: 257 ttgatgtgtttacctcttttagttactttctggataaaatacaaatgatttaaaacaatt 316
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttggtgtgtttatctcttttagttactttctggataaaatacaaatgatttaaaacaatt 689

                                                                       
Query: 317 gatttgtgaacctgaaatggacaacgtcatgagttactggaatctaagtatttaactaat 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gatttgtgaacctgaaatggacaacgtcatgagttactggaatctaagtatttaactaat 629

                                                                       
Query: 377 gccttctaatatattgttaactggctatgcagaaacaacaggttagctaagttcaaattc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gccttctaatatattgttaactggctatgcagaaacaacaggttagctaagttcaaattc 569

                                                                       
Query: 437 tagcaatttaaagtttaagactaaataaactacagagtgttgattatgtagaatacagac 496
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tagaaatttaaattttaagactaaataaactacagagtgttgattatgtagaatacagac 509

                                                                       
Query: 497 atgttttaagccagaaatatatctaggctatctagtatctatgatttttaattccataac 556
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 508 atgttttaagccagaaatatatctaggctatctaatatctatgatttttaattccataac 449

                                                                       
Query: 557 ttgcctgagagattttttttaaatatatatcaaccaagcaacaaacccaaataaagaagc 616
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 448 ttgcctgagaga-tttttttaaatatatatcaaccaagccacaaacccaaataaagaagc 390

                                                              
Query: 617 ctttgctggaaattttttttaaatctatattttcctaagaatgttccattt 667
           ||||| ||||||  |||||||| ||||||||||||||||||||||| ||||
Sbjct: 389 ctttggtggaaa-attttttaagtctatattttcctaagaatgttcaattt 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1065
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1055
Effective search space:   693135
Effective search space used:   693135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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