BAC Information

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BAC

Clone NameMSMg01-049E14
Chromosome12 (Build37)
Map Location 41,740,431 - 41,740,962
singlet/doubletsinglet
Overlap genenone
Upstream geneArl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4, LOC638487
Downstream geneLOC100043157, LOC100043162, Lrrn3, Immp2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049E14.T7 (MSMg01no049_e14.b1)MSMg01-049E14.TJ (MSMg01no049_e14.g1)
ACCAG278795AG278796
length1,3071,278
length of high quality
(start - end)
289 (123 - 411)533 (77 - 609)
definitionCHROMAT_FILE: MSMg01no049_e14.b1 PHD_FILE: MSMg01no049_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:08 2005CHROMAT_FILE: MSMg01no049_e14.g1 PHD_FILE: MSMg01no049_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCTCTNNTTTACATTGGCCGCTAAGACTCACTAAGGGAGAGGATCCGC
GGAATTCTTTTGCATATTAAAAGACCTTGAATGCTTGTGTCTCCTAAGAA
TTAAGAAGCTGACTCCTGTCGAACACCCGCAAGGACCCACACAGGATCCA
CCACGGGATCCTAAGACCTCTGGTGAGTGGAACACAGCACCTGCTACAAT
CCAATCGTGCAGGACCTGAGACTGCATTAATTAAGGAAGCAGGTAACCCG
GCCTGATACGGGGCTCAAGTCCCTTCCGGCTGGCCCACTGCAGCACCGAG
GTCCCTGGCCCGGGGAGTCTGTGGACACCCGCAAGAACCCACACAGGATC
TGCCAAGGGATCCTAAGTCCTAAGATCCTAAGTTGTGGTGAGTGGAATAG
AACTTCTGCCATGAGGCAGGTTCAAACACCAGATATCTGGGCACCTTCCC
TGCAAGAAGAGAGCTTGCATGCAGAGAGTACTCTGACACTGACACTAAGG
ATAGAGCTAGTCTCCCAGGTCTGCTGATAGAGGCTAACATAATCCCCCGA
GGAACAAGCTCTAACCAGAGACAACTATCACAACTAGCTCCAGAGAATAC
AAGATGTCAAAAGGCAAACATAAGAATCCTACTAACAGAAATCAAGACCG
CTCACCATCATCAGAACACAGCACTCCCACACCACCTAGTCCTGGCCACC
CCAACACAACCAAAAAGCTAGCACCCAGATTTACAAGCATCTCTCATGAT
CATGGTAGAGGACATCAAGAAGGACTTTATCAACTCACTTAAAGAACTAC
AGGAGAACACTGCTAAAGAGTTACAAGTCCTTTAAAGAAAAACCGGTAAA
ACACAACCCAACAGGTGATGGAAATGAACAAAACCCTTCCTTAAACCAAA
AAAGGGAAATTAGACCCTTTTATATAAACACCCCAAGTGAAGTTAACCCT
GGAAATAAAAATCCCTAAGGAAAAAAATCTGGAAACCATAGAATCCTAAG
CTTCTGCTTCTAAATCTAATAGAAGGTAAAAAAAAACTCTCAGTTACCGT
AAAATTCCTTTAAAGAACAATCCCCCTAACTATTTAAAAAAAATGGGAAA
ATGCAAAAAAAAATCTTATACTCCTAAATATTCCCGGAAAATCCCGGAAC
ACATGTTGAATATAATCCAACTCTTTTCTATAAATTTTAATGGTGGTGAA
TAATGCAAATATTCTCTCCTCTTTAAAGGTGGCCCCCAAAATCTTTCTTC
TCCTATATATTTATTAGCAATAAATACTTTTCCCAACATCTCAGATAAAC
GCTGACT
TTTTTAACTATGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTTTAGTTTTTTGCTTTTTTTTTTTTTTTTTT
TTTGAGACCCGGTTTCTCCTCTGTCCAACAGCTCTGGCTCTGTAAACCAG
GCTGGGCTCAAATTCACAGAGATCCACCTGCCTTTGCCTCCCAAGTGCTG
GGACTAGAGGTATGTACCACCACCACCTCGCCATTTACTTTTTTAATTGA
TGTTTAAATTTTTTCACCGTTGGCCAAAGGATGTAAGTTTCTGTGTTCCT
TACACTTTCTTGTTCTTGTGAACAGATTCCTTGTTTGTGACACGTGATAG
CCCTTGCTTATCTTGTGTGTACCTTGTGTCAGCCTTTAATGAGACACTCA
TTTTCCCAGCCCTGGCTTCTATTATTTGAAACTAGCTTTAAAAAAATATC
CGAATGGAAGACTTGTCAGATGTTATTTATAGTAATAATACATCCTATCG
ATCTACTTTTCCAAGACTAACATTAGAAACATAAATTTGTGCAACAAATA
AAACTCCAATTTCTGATTTTATTTTTAAACTCACTTTTATATTATTTATG
GAAATCCACTACACTGCTCATATCTAAAATTAGGTTACTATCGACATGCC
AATACTTCTTTTCTTCCAGATGGTACAATTCACATTAAAAATTTCCAAGT
TCTGAAATAAAGAATATTAATAAACTCTTTAGCGTTTTCATATTACTTCA
CATACCCATATTAATCCCCTCAAATCTGTTACAGTCACAAACTCTGAAAC
ACTTTGGAACTGTGATTTGATGTGAAACCTGGAAATTCATGTTTTTCCTC
TTCCCTTGGTTAAAGGACTATAACCTCATATGTAAGCCAAACTCTTGCGG
AAACATGCATGGCATTTTTAAAAAATTTATCATACAAATGGTATTGGAAA
AAAATTTCCGAAGGAAGCTCTTATAAACTGTGTTTTATGAAATATAATAT
CCGGAATTTGTTTACCCCCCCCACCAATCAAATTATATATATTTTGCGCA
CAGGTTAGTTTCTGTACAAATAATAAATATTATTTCAATTCTCCTCTTCA
CATCATTCCCTATNATTCATTCTCTTCTATCAACTCTTCTTAAGTATATA
TCCTTAACTTTACATAATAATAATTTGATTAATTTATACTAATAATTCAA
TATTAATATAATTATAATGTACAATTTATCTTATCAATATATATCTAACC
ATTATCATATGTTATTATTCTGCATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_e14.g1 MSMg01no049_e14.g1 CHROMAT_FILE:
MSMg01no049_e14.g1 PHD_FILE: MSMg01no049_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:08 2005
         (533 letters)



>mm_chr12_41740234_41741166
          Length = 933

 Score =  913 bits (472), Expect = 0.0
 Identities = 516/532 (96%), Gaps = 3/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgc---tttttttttttttttttttttgagacccggtttctcctctgtccaacagct 57
           ||||||   |||||||||||||||||||||||||  ||||||||||||||| ||||||||
Sbjct: 198 ttttgcttttttttttttttttttttttttgagatacggtttctcctctgttcaacagct 257

                                                                       
Query: 58  ctggctctgtaaaccaggctgggctcaaattcacagagatccacctgcctttgcctccca 117
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctggctctgtagaccaggctgggctcaaattcacagagatccacctgcctttgcctccca 317

                                                                       
Query: 118 agtgctgggactagaggtatgtaccaccaccacctcgccatttacttttttaattgatgt 177
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 318 agtgctgggactagaggtatgtactaccaccacctcgccatttacttttttaattgatgt 377

                                                                       
Query: 178 ttaaattttttcaccgttggccaaaggatgtaagtttctgtgttccttacactttcttgt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 378 ttaaattttttcaccgttggccaaaggatgtaagtttctgtgttccttacattttcttgt 437

                                                                       
Query: 238 tcttgtgaacagattccttgtttgtgacacgtgatagcccttgcttatcttgtgtgtacc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcttgtgaacagattccttgtttgtgacacgtgatagcccttgcttatcttgtgtgtacc 497

                                                                       
Query: 298 ttgtgtcagcctttaatgagacactcattttcccagccctggcttctattatttgaaact 357
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 498 ttgtgtcagcctttaatgagacactcatttccccagccctggcttctatcatttgaaact 557

                                                                       
Query: 358 agctttaaaaaaatatccgaatggaagacttgtcagatgttatttatagtaataatacat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 558 agctttaaaaaaatatccgaatggaagacttgtcagatgttatttatagtaataataaat 617

                                                                       
Query: 418 cctatcgatctacttttccaagactaacattagaaacataaatttgtgcaacaaataaaa 477
           | ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 618 cttatcgatctacttttccaagagtaacattagaaacataaatttgtgtaacaaataaaa 677

                                                               
Query: 478 ctccaatttctgattttatttttaaactcacttttatattatttatggaaat 529
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctctaatttctgattttatttttaaactcacttttatattatttatggaaat 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)