Query= MSMg01no049_g21.b1 MSMg01no049_g21.b1 CHROMAT_FILE:
MSMg01no049_g21.b1 PHD_FILE: MSMg01no049_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:26 2005
(641 letters)
>mm_chr12_61765500_61766538
Length = 1039
Score = 1164 bits (602), Expect = 0.0
Identities = 631/642 (98%), Gaps = 4/642 (0%)
Strand = Plus / Minus
Query: 1 ttatggaatgctcatttccttatgaaatatgtaaacgatccaagacttacaatataaaag 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 839 ttatggaatgctcatttccttatgaaatatgtaaatgatccaagacttacaatttaaaag 780
Query: 61 acccaaaaaaatattttcttcccacaatgaagaacatataacggcttcctaaagcacctc 120
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 779 atttaaaaaaatattttcttcccacaatgaagaacatataaaggcttcctaaagcacctc 720
Query: 121 agacagcttaggctttaagacatctgaactgtcttgatagagataaaccattcctctcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agacagcttaggctttaagacatctgaactgtcttgatagagataaaccattcctctcag 660
Query: 181 gaatctaggaggcagaaatagtaaaaagttatgtggccctgaaaaaagcaagtaataata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaatctaggaggcagaaatagtaaaaagttatgtggccctgaaaaaagcaagtaataata 600
Query: 241 tttttaaatgataacacagtattgaaaaaagatttaggaacatagtgaatcccaaatata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttttaaatgataacacagtattgaaaaaagatttaggaacatagtgaatcccaaatata 540
Query: 301 aattaagttcttaga-ttttttttctcctctaaaggaggataagaagaagatataaatga 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aattaagttcttagatttttttttctcctctaaaggaggataagaagaagatataaatga 480
Query: 360 agaaactatcagatacacacatctttgatggtatatagactgaaactctcttggtgctat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agaaactatcagatacacacatctttgatggtatatagactgaaactctcttggtgctat 420
Query: 420 cagaatctaaacaccttctttggtggtacacagtcttaaatacccttctgctacttagac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cagaatctaaacaccttctttggtggtacacagtcttaaatacccttctgctacttagac 360
Query: 480 ctaaactcccctggtgttactgagatttcagcatcattctttggtggtgcagataactaa 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 359 ctaaactcccctggtgttactgagatgtcagcatcattctttggtggtgcagataactaa 300
Query: 540 aaatccttggtagtatacatccttaaacactcttggtggtactaagatgtcaacatcctt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aaatccttggtagtatacatccttaaacactcttggtggtactaagatgtcaacatc--- 243
Query: 600 cttttgtggtagagacctaaactcttttggtggtacaccgaa 641
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cttttgtggtagagacctaaactcttttggtggtacaccgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1039
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1029
Effective search space: 649299
Effective search space used: 649299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_g21.g1 MSMg01no049_g21.g1 CHROMAT_FILE:
MSMg01no049_g21.g1 PHD_FILE: MSMg01no049_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:26 2005
(656 letters)
>mm_chr12_61613461_61614516
Length = 1056
Score = 1122 bits (580), Expect = 0.0
Identities = 641/664 (96%), Gaps = 10/664 (1%)
Strand = Plus / Plus
Query: 1 gttgatcttctgattgggtcaaacaaattccacacgtaa-tagtcctggctgcccgccta 59
|||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||
Sbjct: 195 gttgatcttctgattgggtcaaacaaattccaga-gtaggtagtcctggctgtttgccta 253
Query: 60 aaaggagaaggatccatgagaaaaaaaggcaaaggcaaaaccttaaccccaatgaagaga 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 254 aaaggagaaggatccatgagaaaaaagggcaaaggcaaaaccttaaccccaatgaagaga 313
Query: 120 gtaagcaccct-ggccccaaatcagggtaggaaggaagactcagtgactatgggcttttc 178
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtaagcacccccggccccaaatcagggtaggaaggaagactcagtgactatgggcttttc 373
Query: 179 caagagatctaggtttaatttacaaacctcagcaactctagttccaggggattgaagatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 caagagatctaggtttaatttacaaacctcagcaactctagttccaggggattgaagatg 433
Query: 239 cccctttcttgcttcggagctcactaggcatgcacaaatatgcacagaggcaaaataccc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cccctttcttgcttcggagctcactaggcatgcacaaatatgcacagaggcaaaataccc 493
Query: 299 atacacttaaccataaataaatcttaaaaaaaaaaaaaa-----caagaggaaaccatga 353
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 494 atacacttaaccataaataaatcttaaaaaaaaaaaaaaaaaaacaagaggaaaccatga 553
Query: 354 atatccatgtggaggaatgtctgtgtggttgtcttcctttggaccacagatctcaatcct 413
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 554 atatccatgtggaggaatgtctgtgtggctgtcttcctttggaccacagatctcaatcct 613
Query: 414 tttattattccctaagaaaacacaggggcagggccctccatcctttcgccccaccccttc 473
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 614 tttattattccctaagaaaacataggggcagggccctccatcctttcgccccaccccttc 673
Query: 474 atatcttcctgagctcaagtgtttaaagattatgtgattgtgcttagaagaaacatagtt 533
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 674 atatcttcctgagctcaagtgtttaaagattatgtgattgtgcttagcagaaacatagtt 733
Query: 534 actttatgcaaggaaactaggctataacggaaaagcatttgaattttctaaattatgaag 593
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 734 actttatgcaaggaaactaggctataatggaaaagcatttgaattttctaaattatgaag 793
Query: 594 atattttaataccttta-accttatgattgtataagtattagaatgttacctataactta 652
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct: 794 atattttaatacctttagag-ttatgattgtataagtattagaatgttacctataacata 852
Query: 653 tctt 656
||||
Sbjct: 853 tctt 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
