BAC Information

Click to search

BAC

Clone NameMSMg01-049H16
Chromosome12 (Build37)
Map Location 100,613,149 - 100,613,345
singlet/doubletsinglet
Overlap geneChes1
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049H16.T7 (MSMg01no049_h16.b1)MSMg01-049H16.TJ (MSMg01no049_h16.g1)
ACCAG278919AG278920
length1,2721,302
length of high quality
(start - end)
197 (101 - 297)49 (128 - 176)
definitionCHROMAT_FILE: MSMg01no049_h16.b1 PHD_FILE: MSMg01no049_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:32 2005CHROMAT_FILE: MSMg01no049_h16.g1 PHD_FILE: MSMg01no049_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATAGGGAGAGGACCGCGGAATTCTAAGCCTAGGGAATGCCCCTTT
AAATCCTGGGTAAGCATAATCAACAGAGTTCCTACCCCTGCCCATGGGAA
AACCTGATCCAGAGAGTCTCCCACTAAGACTCTGTTTCCAGGTGAGCCTC
AGTCCTGTCAGACTGACTGTTAGATCTAACCATCACTACATTGTAAAGAA
GCAGAACGGGTTCCTGGGACACTCCTAAAGTTGCCCAGTGTGCTGATATC
CATCACCTCCAACAGCCCAGCACTAACTCCTCAAAAGTGAGTGTTGGACT
GTTTGCTAAGTAGCTTTGGCAATGAGGTCCTACTGTGTAGCCCAATCTAG
AATTCAAGGATGACAACCAGACGTGTGTCTTGTTGTCACGGTTTCTGATG
TTTTTATTTTCACTAATAAAATGTTTTCTGATCATGCTAACCAGAACTAT
TTCATCACGAGGTTATTTTAAGGTTCCGGCCTCACTCTATAGAGCCCCCT
AGAGACAGCCTTCCCAACAGCGATCCTAAACTCTCAGCCATGTCCCTGTT
CCGCCCACGCCTGAACCCCTGACTCATCTGTAATGACGATCACAAGCTTG
CCACACCAGCATGAGGTTGTCCTGCTGCTTACTGGACACTTGGCCTAGAT
CACTCTCTTCACCTATACAGAAACACTTCTTCCCGTATAGCAAGACNCGG
GTGTTTAGATGACATACTCTGATAGCCATGTTGACATAAACCCTGTACTC
CCGAATCTGATTACCCATACTAGAACTGTTGCTCTATTCACACTTGCTTC
TCTCCAACTTATATACTATTCTCTACTTACATCGTATCTCTATGTGAACC
TGTTTTTGCTCCTGAGCTCTTGGACTAATGAATATGTTTTTCTCATATTA
CTACACCCCTTTTTTTTTTTCTTAATTCAATTCTAACCAAACTTGGTATT
ATCTCTCCCCTATTTACCAAATTATTTCTCTGAACTTATTCTCTTTTTGT
CTCATCTAACATTATTCCACTTCCTTCTTCGAATATCTCTCTTTATATCC
TATTTCCTACTGTGCCATCCACAAATTCTTGGCTCCCATTTATTACTCCC
CTTATACTCCTCTTCCCTTCTGAATCTTTGTAATATTCTATTTATTACCT
CCTAATAAACTCTATATTATTTTTACTCCGTACTTCATCATCCTCTGATC
TGCTTTCACCTCTCTCATATTTCTCTCTTCATCTTACTTTTGGTCATTCT
TCCTTTTCTTTCCTTCAATATG
ACATAGGAGCCGGTGTCCCCGGTCGTCTAXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCTTTTAGAGTCAGAGATGAATGTGAATCTCTCTGACAAT
ACCCTTTATATTTGCCCGCTCGCTGGAATCATTCTTGATTTGTAAAATCC
GAGCCCCACCCATTCACCCTGAGGCCTGTCCTGTGGTTACACACTTAGTA
CAGACCTCTCCCCTCCCACCTTGCTCTCGTGTTGGCTGTTTCCTTTAGAG
CCCGCCTTAGCTCTGTGTCTCCTGTTTTACTCTGCTTTTTTGGTGAGTCC
TCCATTGGTGTATGACCACGTTTATCCCCGCTATGTTATGAAAATTGTTC
AAATTCTTCCTGTTTGTTAACTGCCCTCGGTTTAAAAAAAATATTTTTTA
TCCAAGTGTTTTCTTCTGAGTGTGTCTTATTCTCTTGATGGCTCACATTT
ATACTCTCCCCTACTTGTGAGAAAATATTCTCAAAAATAAACTTTGGGTC
ATTTTCAATGTAACGACTGGCCAAGTGTTCATCCTACCTGAAACGAACGC
CTGGCCCTCTTTTCTCTTGAGATTCTGCTCTTGATGCCTATCTTATTCCT
CCAGCTAGGTAATATCTTTGGCCCGCTATTGACCTCTTTTATATTAACTT
AATATAAATACCTTTGCTATATATATTTATAACCGACTGCTGCTTGAATT
TTTATTGTTGAAACTCCTGCTTACACTCCATAAGATCCTGTAATTTGTTT
CCATCTACCTCTTATAAGACTATATTTTGATTGCTATTTTTAAATGTTCT
TTGATAAAAACCATTAATTTATTAACGATCACATTCTTGAATTTTCTTAT
ATAGTATTTAATTATATTTTTTCAATAAATGGATTTCTTCGATCATATCT
TTATTCGTTTTTTTCTTTCTCCTTCTAAATAAAATCAAATTTCTTCTTTA
TTCTTTTTATTACATTCTCTCCCTATATTATTACCTAATTCACATTAATC
TACAATACCTTATCACTACTCTTATTTCTATCATGTATCTCTAAATCTTT
AATTAATNTCCTTGTTTTTACTTGATCAAACTTCTATATATATATTTTTT
CTATCTATATCATTATATAACCATACTTTAAATTTTCATATTATATAATT
TAATTCATCCCCCCATTATATCTAAATTATAATATACTATATGTNTATGT
ATTCTTAATCTCTTAATATATTCTTACTACTTTCATCTTATCCTTAGATT
CATATACTTCATACATATTATTTCTTACGTCATATTANNCTTTCTCTGTA
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_h16.b1 MSMg01no049_h16.b1 CHROMAT_FILE:
MSMg01no049_h16.b1 PHD_FILE: MSMg01no049_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:32 2005
         (197 letters)



>mm_chr12_100612949_100613545
          Length = 597

 Score =  366 bits (189), Expect = e-106
 Identities = 195/197 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctgatccagagagtctcccactaagactctgtttccaggtgagcctcagtcctgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctgatccagagagtctcccactaagactctgtttccaggtgagcctcagtcctgtca 260

                                                                       
Query: 61  gactgactgttagatctaaccatcactacattgtaaagaagcagaacgggttcctgggac 120
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 261 gactgactgttagatctaaccatcactacattgtaaagaagcagaaggggttcctgcgac 320

                                                                       
Query: 121 actcctaaagttgcccagtgtgctgatatccatcacctccaacagcccagcactaactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcctaaagttgcccagtgtgctgatatccatcacctccaacagcccagcactaactcc 380

                            
Query: 181 tcaaaagtgagtgttgg 197
           |||||||||||||||||
Sbjct: 381 tcaaaagtgagtgttgg 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)