BAC Information

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BAC

Clone NameMSMg01-049H24
Chromosome12 (Build37)
Map Location 14,751,847 - 14,752,212
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238091, EG633789, LOC668481, AW125753, LOC100043256
Downstream geneMap1lc3-ps7, LOC668492, LOC100042426, LOC217409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049H24.T7 (MSMg01no049_h24.b1)MSMg01-049H24.TJ (MSMg01no049_h24.g1)
ACCAG278928AG278929
length1,2861,286
length of high quality
(start - end)
77 (184 - 260)367 (78 - 444)
definitionCHROMAT_FILE: MSMg01no049_h24.b1 PHD_FILE: MSMg01no049_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:35 2005CHROMAT_FILE: MSMg01no049_h24.g1 PHD_FILE: MSMg01no049_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTC
CAAAGTTTCACATCCTTAAAACATTTAATCATCTCATTGTCCAGCCGTTA
TTACCTTTTTGTATTTGCCGGGGTTGTAGAGATGGCTCTGTGGTTAAGAG
CACTGACTGCTCTTCCAGAACCGCTGCGTTTAATTCCCAGCTCCCACACC
GTGGATCACCCCATCTCTAACTTGCGTTCCAGGAGACTGCATGCCCTTCT
TCTGGCCTTCATCGGCACTGCATGCATATGCCGCGCTGACACATATGCAG
GCCAAAATTACAGATTAATTTTCCTTCATAAGTCCTTACATAAGCCCGTC
AGGAACAAATGAAATGTTCTTCCACCCATCCTTCTACTTCTGATAGCTGT
TACTATTAAATTTTATTCTTTAGAATTATTTTCAAGACTGTTTACAACCA
TTTCTGATTTTAGTACAGAGGGAGGGTCCCATAGTGAAATGCTCTGCATT
ACAGTAGCTCTGATTCTGGTAGAGCTGCATATACATAAGGACATATTTGG
CTAAGAGCCCAGTGTCACCACATGATTCCCTTATGTCTCATGAGCACTGC
AGTCTGATAGCAGTTTTCTGTTGAATTCAACACTGTTGCGTTTGAAAGTC
TCATAGTTCTATGTGAGACTTCACCGTTGTTGCTTCAAAGACCACCTCAC
TTTTCATCCTGGATTTTTCAGGTTCAGCATTTCCTCTGTGTCTTATGTTA
GTTACAAAACTCGGTACTTCCAAATTTATTTTTTAATTTTTTTTTGAACT
ATTCCCACATTTAATAACTACTTGCTTTTTAACTTTTTTTATTTCTTCTA
TTACTAATATCCATCCTCTATTTCACCATACTGTTTTCGGGTTCATTCCC
CTCTTTATTTTTCTATAATCTTTTATAATTTAACATCTTTTTACTTCCCT
TTATTCTTCTCTCTTCTATCGTTTGAAATTATTGCCGCTTCCTCTTTTAT
TCTTTTGCTCGTTCCTTATTTTTATTCCCTATTCCTTTACGTTTTTCCCT
CTTCTTTTTTATTTCCTCCTTTATCTCTTTCTCTCTTATCTCCTTTTATT
ATTTACCTCGTCTGTAGATTTTCTCTTTTCTTTTATTACTTTCGTATCAT
TTCTTTATATATCTCATGTACTACTTTTAATTTATCCTACTTATTTACCC
TCACTACCCTTACTCTATCTTTACTATGTACTCTTATCTCTCTCTTACTA
TATTGTTACANTCTTATACTTCTCCTTCCCGTCTTG
NTTAACAGTGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCCTTAAATTCCTTTCATCTTTAACTTTGGCAAATA
GGAATTGCATTTATCTACCACCCCTTGAGTATTACATTCCTTTATTTAAC
AATTTATTTATTTACATATATTGAAATATTTATCATTTCATACATGATTA
GCCTGTCATTTATACCTTTTGGCGATTAATTTGCAATCATTTACTTATTC
TCAGTCATTAAAGATAGGAGTTTTTCCTCCCTAAACAGCCTACCTAGCAT
TTTTAGATCATAAAATCCTGCGATTATATTTAATGGTATTTTGTTTTCAG
ACCTGATATTAAAATATCTGCCCTAGACAGAAATTAAACTTGAGCAAGCG
ATTTCTCTGGAATTATTAACCTGGGATTGCTCTTAGCTTAATATTCCTTT
TGTGTATGTGTGTATGTTCACGGGGGAAGGGCATACTGACAATACTAATT
CAATTAGAAAACCCAATTTCGGCCTGTTGTTAAGAATTCTCAGGGCACAC
TTCATCCTTTTCTTTTGATAGACAATTCAGACAAAGGCCGTCTACTGTGT
TTATGTCTGTGCTGCACAGAATATGTATTAATTTCTGTATTCGTAGAGCC
GATACCAAACTCTTGATACTTTCTCTGTGTTCAGTAAATACGTGCAAGCT
ATGTTTAGCACTGTGCATTCAAGTCATGTAAAGAAAATTGTATTCTTGAC
CGAATACTGATAATGTGCTTGACTCACAAAAGTTCCTAATCCTTCATTAA
GACTCCCTCTACAGTTTAATTTTTGCTAGTCTTAAAGTCGATAAAAAACT
GGTTTCCCTTCTTTAATAACCCTGGTCGTTGTTATTTTGCGGTTTTACAT
TACCTCCTTCATATATTTCTCTATCTTATATATTATTCCCTTTTTTTATC
TGGAACGGTTTCCTGAATCTAAAATTGTATATTTCCCCATTTAGCTAAAA
ATTTCTATTATTCTTCTCTTCTAAAGAAATTCTCATTTTTTTATATAACT
CTTTGAACTATAACTTACCTTGTGTTTCTCTCTCCTTACATCACCTTATA
TTTACAATTCCATTCTTTTTCTTAGTTTATTTCCCCCCCCCAAAATACAN
TTATCGTTCACTCATTTCTCTCCTCATATCTTCTGACTACCCACATTTTC
TTCTAGCCCCTCTCGTGGTATTATATATAAACTATTGTCTCTATCCAANA
GATACATCTTCTCTATCTTTGTTCTCTCTATCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_h24.g1 MSMg01no049_h24.g1 CHROMAT_FILE:
MSMg01no049_h24.g1 PHD_FILE: MSMg01no049_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:35 2005
         (367 letters)



>mm_chr12_14751646_14752412
          Length = 767

 Score =  636 bits (329), Expect = 0.0
 Identities = 358/371 (96%), Gaps = 9/371 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatctttaactttggcaaataggaattgcatttatctaccacccc---ttgagtatta 57
           |||||||||||||||||||||||||||||| ||||||||||||       ||||||||||
Sbjct: 202 ttcatctttaactttggcaaataggaattgtatttatctacca----agtttgagtatta 257

                                                                       
Query: 58  cattcctttatttaacaatttatttatttacatatattgaaatatttatcatttcataca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cattcctttatttaacaatttatttatttacatatattgaaatatttatcatttcataca 317

                                                                       
Query: 118 tgattagcctgtcatttatac-cttttggcgattaatttgcaatcatttacttattctca 176
           ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 318 tgattagcctgtcatttatacactttggg-gattaatttgcaatcatttacttattctca 376

                                                                       
Query: 177 gtcattaaagataggagtttttcctccctaaacagcctacctagcatttttagatcataa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtcattaaagataggagtttttcctccctaaacagcctacctagcatttttagatcataa 436

                                                                       
Query: 237 aatcctgcgattatatttaatggtattttgttttcagacctgatattaaaatatctgccc 296
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatcatgggattatatttaatggtattttgttttcagacctgatattaaaatatctgccc 496

                                                                       
Query: 297 tagacagaaattaaacttgagcaagcgatttctctggaattattaacctgggattgctct 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tagacagaaattaaacttgagcaagcgatttctctggaattattaacctgggattgctct 556

                      
Query: 357 tagcttaatat 367
           |||||||||||
Sbjct: 557 tagcttaatat 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)