Query= MSMg01no050_j24.b1 MSMg01no050_j24.b1 CHROMAT_FILE:
MSMg01no050_j24.b1 PHD_FILE: MSMg01no050_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:11 2005
(577 letters)
>mm_chr12_56126506_56127481
Length = 976
Score = 895 bits (463), Expect = 0.0
Identities = 560/617 (90%), Gaps = 43/617 (6%)
Strand = Plus / Plus
Query: 1 aaaataaa-taaaggagctggatgatggtggcacagaaggcaggggcaggcagatctcag 59
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 aaaa-aaattaaaggagctggatgatggtggcacagaaggcaggggcaggcagatctcag 221
Query: 60 aactcaaggccaactttgtctacagaacgagttccaggacagccagagctacacagagaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aactcaaggccaactttgtctacagaacgagttccaggacagccagagctacacagagaa 281
Query: 120 gccctgtttttgaaaaaaa-------------------actaactaactaactaactaag 160
|||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 282 gccctgtttt-gaaaaaaactaactaactaactaactaactaactaactaactaactaag 340
Query: 161 aaatgctcactgtcaagagagctcagtgggcagaatcacttgctgaacaaaattaataat 220
||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct: 341 aaatgctcactgtcaagagagctcattgggcagaatcacttgctgcacaaaactaataac 400
Query: 221 ctgagtccaagctccaggtc--------------------aagccccaagagttgtctct 260
|||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 401 ctgagtccaagccccaggtccccatggaaaggagcacgtcaagccccaagagttgtctct 460
Query: 261 agcctccacacatgtggcatggcacacatgcccccatactccacatacatgcatacaaca 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agcctccacacatgtggcatggcacacatgcccccatactccacatacatgcatacaaca 520
Query: 321 acaatagtaattgtataatagtaacaaataaaaatataatatgaagaaaactgtggcaga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acaatagtaattgtataatagtaacaaataaaaatataatatgaagaaaactgtggcaga 580
Query: 381 gcgtgaggacgcgtgcttttgataccagcatccggggacacagaggccagttataggtca 440
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 581 gcgtgaggacgcgtgcttttgataccagcatt-ggggaaacagaggccagttataggtca 639
Query: 441 gccagaactcaaaaataagtgaataaaattaataataattagtataggaatccctgcaaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 640 accagaactcaaaaataagtgaataaaattaataataattagtataggaatcagtgcaaa 699
Query: 501 ggtcataagtggtatacataattcagtggtgagatgacttggccctttccaccccataat 560
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 700 ggtcataagtggtatacataattcagtggtgagatgacttggccctttcaatcccataat 759
Query: 561 aactgaagttgacaatg 577
|| |||| |||||||||
Sbjct: 760 aattgaacttgacaatg 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space: 547722
Effective search space used: 547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_j24.g1 MSMg01no050_j24.g1 CHROMAT_FILE:
MSMg01no050_j24.g1 PHD_FILE: MSMg01no050_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:11 2005
(512 letters)
>mm_chr12_56426103_56427012
Length = 910
Score = 781 bits (404), Expect = 0.0
Identities = 411/414 (99%), Gaps = 2/414 (0%)
Strand = Plus / Minus
Query: 1 tgttctgaggactgagattatcaccatacccatgcctggtttttggggtttttttttttg 60
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 412 tgttctgaggactgagattatcaccatacccatgcctggttttttggg--tttttttttg 355
Query: 61 ttctcctttaatgaaaatgcacataccaaaaaaagggggcaggtataggaaaaaaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttctcctttaatgaaaatgcacataccaaaaaaagggggcaggtataggaaaaaaaaaaa 295
Query: 121 ggtgtgtgtgtgagtaaaaacccaagaaggaagaatgtatcagagaaacaacactaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggtgtgtgtgtgagtaaaaacccaagaaggaagaatgtatcagagaaacaacactaagtt 235
Query: 181 taacctgttaaaataattacatagtagatctaaggccaggcctagtggcatatgcaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taacctgttaaaataattacatagtagatctaaggccaggcctagtggcatatgcaagtc 175
Query: 241 acacagctggacaccaaggcaggaggattctgaatttgagatccaactgagttacacagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 acacagctggacaccaaggcaggaggattctgaatttgagatccaactgagttacacagt 115
Query: 301 gagatcctctcttaaaaaacaaaaagcacaaaattaaaaaataaaaataaaaagggactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gagatcctctcttaaaaaacaaaaagcacaaaattaaaaaataaaaataaaaagggactg 55
Query: 361 ggtgaaaaagaaagagcggatggaagcgataaggtcggggcttcccgggaacac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ggtgaaaaagaaagagcggatggaagcgataaggtcggggcttcccgggaacac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 910
Length adjustment: 10
Effective length of query: 502
Effective length of database: 900
Effective search space: 451800
Effective search space used: 451800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
