Query= MSMg01no050_p12.b1 MSMg01no050_p12.b1 CHROMAT_FILE:
MSMg01no050_p12.b1 PHD_FILE: MSMg01no050_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:59 2005
(402 letters)
>mm_chr12_59348090_59348891
Length = 802
Score = 623 bits (322), Expect = 0.0
Identities = 342/356 (96%), Gaps = 12/356 (3%)
Strand = Plus / Plus
Query: 16 gaattcaactgtatcaatgccatttgtccaacactgccgtaggcagttacatttgcaata 75
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaactgtatcaatgccatttgcccaacactgccgtaggcagttacatttgcaata 263
Query: 76 tccagttttacttctggggcttaactaaaaaaatgaattacaaccaatgccctccaggac 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccagttttacttctggggcttaactaaaaaaatgaattacaaccaatgccctccaggac 323
Query: 136 acagcaattttgggagccttttttttttttt------------aaatcacagcgagcaat 183
|||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 324 acagcaattttgggaggctttttttttttttttttttttttttaaatcacagcgagcaat 383
Query: 184 gtagagagtattcctctgtctcaggctttaagaagacacattttggccatatttaagatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtagagagtattcctctgtctcaggctttaagaagacacattttggccatatttaagatt 443
Query: 244 ccaatcattgaacactccttgagtcaattatatgtgcacttagttctgctatttgaaaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccaatcattgaacactccttgagtcaattatatgtgcacttagttctgctatttgaaaag 503
Query: 304 agggcagaatgtgaaaaatgggagagtatctgttgcaaataatatatatatatata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agggcagaatgtgaaaaatgggagagtatctgttgcaaataatatatatatatata 559
Score = 81.9 bits (42), Expect = 7e-20
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 346 tatatatatatatatatatatatatatatatatatatatatatata 391
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 782 tatatatatatatatatatatatatatatatatatatatacatata 737
Score = 80.0 bits (41), Expect = 3e-19
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 345 atatatatatatatatatatatatatatatatatatatatatata 389
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 781 atatatatatatatatatatatatatatatatatatatacatata 737
Score = 76.1 bits (39), Expect = 4e-18
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 345 atatatatatatatatatatatatatatatatatatatatatatata 391
||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 771 atatatatatatatatatatatatatatacatatacatatatatata 725
Score = 76.1 bits (39), Expect = 4e-18
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 345 atatatatatatatatatatatatatatatatatatatatatatata 391
||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 773 atatatatatatatatatatatatatatatacatatacatatatata 727
Score = 76.1 bits (39), Expect = 4e-18
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 345 atatatatatatatatatatatatatatatatatatatatatatata 391
||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 775 atatatatatatatatatatatatatatatatacatatacatatata 729
Score = 76.1 bits (39), Expect = 4e-18
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 345 atatatatatatatatatatatatatatatatatatatatatatata 391
||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 777 atatatatatatatatatatatatatatatatatacatatacatata 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 10
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_p12.g1 MSMg01no050_p12.g1 CHROMAT_FILE:
MSMg01no050_p12.g1 PHD_FILE: MSMg01no050_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:59 2005
(728 letters)
>mm_chr12_59369569_59370696
Length = 1128
Score = 1336 bits (691), Expect = 0.0
Identities = 718/727 (98%)
Strand = Plus / Minus
Query: 1 taggccccttgactggcaatttgcacgtctgggtttcctttggcacagtaaagaaagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 taggccccttgactggcaatttgcacgtctgggtttcctttggcacagtaaagaaagaga 868
Query: 61 gctgcccctagagatcagtggttttactagtgaggcctccagcttagaaagaagtaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gctgcccctagagatcagtggttttactagtgaggcctccagcttagaaagaagtaggaa 808
Query: 121 cattcctcacaagatccctcccccagcaccatgctcaggaaacctcccggaagcctggaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 807 cattcctcacaagatccctcccccagcaccatgctcaggaaacctcctggaagcctggaa 748
Query: 181 cagtctacaaattatactgacgccagctccacagtcccggacataaacacaatgggcggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 747 cagtctacaaattatactgacgccagctccacagtcccggacataaacacaataggcggg 688
Query: 241 tgtgggcttatggttcctgcccacgatcatcactgcattctgagatccaaagtccagata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgtgggcttatggttcctgcccacgatcatcactgcattctgagatccaaagtccagata 628
Query: 301 agtgtgagcaagaaaagagcctcacttgatcccggtggcaaacttcttttctcctgctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agtgtgagcaagaaaagagcctcacttgatcccggtggcaaacttcttttctcctgctta 568
Query: 361 tctaagcggggcattggacccccttggcccagcgttgaggcgccagctgtgttcctgacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctaagcggggcattggacccccttggcccagcgttgaggcgccagctgtgttcctgacc 508
Query: 421 cctgaataaatcagggccaaaaagagcctggcagggctctgggacacatttcctgtcacg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cctgaataaatcagggccaaaaagagcctggcagggctctgggacacatttcctgtcacg 448
Query: 481 gcctagggaaagcagttggccaagggagtgttgtgggggacttttcagctgttggaggat 540
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 447 gcctagggaaagcagttggccaagggagtgttgtggcggagttttcagctgttggaggat 388
Query: 541 gagggctcaagagaggcgaggggagggcacacatagtggtagaaagggctgtacagcgcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 387 gagggctcaagagaggcgaggggagggcacacatagtggtagaaagggctgtagagggcg 328
Query: 601 gtgactttagagaaagctccgcgccctccagcaaaccagaggacttgggagcagctgcat 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgactttagagaaagctccgtgccctccagcaaaccagaggacttgggagcagctgcat 268
Query: 661 gttgagtctccagcatgaggccagcgcttgccctgtgcctcctctgtcctgcattctggc 720
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 gttgagtctccaggatgaggccagcgcttgccctgtgcctcctctgtcctgcgttctggc 208
Query: 721 ctcggcc 727
|||||||
Sbjct: 207 ctcggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1128
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1118
Effective search space: 802724
Effective search space used: 802724
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
