BAC Information

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BAC

Clone NameMSMg01-051I14
Chromosome12 (Build37)
Map Location 37,616,561 - 37,616,718
singlet/doubletsinglet
Overlap genenone
Upstream geneAgr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051I14.T7 (MSMg01no051_i14.b1)MSMg01-051I14.TJ (MSMg01no051_i14.g1)
ACCAG280264AG280265
length1,3141,426
length of high quality
(start - end)
---159 (132 - 290)
definitionCHROMAT_FILE: MSMg01no051_i14.b1 PHD_FILE: MSMg01no051_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:22 2005CHROMAT_FILE: MSMg01no051_i14.g1 PHD_FILE: MSMg01no051_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCCTTTAGCCCCCCAANNAANNNANAANNAGNAANNAGAGCCCTTTAG
GCTCCCCCNAANGCCCGAGGNNNGAGGAANNNNNAAAAAGAGANAGANAA
NAGAAACNNCCCCNGGCCCCGAGAAGCCCAAGCAGCAAAACCACCAACAA
AACGGGAAGCCAGCAAGCCGACCCAAACAAGAGAAAAACGCCACAACACC
CCCCCCCCCAGACAGACCACACCACCAACAAAAGCAACACGCACAACCGA
ACACCCCCAAATTTTTTTTCGAGCAGACACGACCNCCCAAGACGCACCAC
CCACCCCCACCAAACCCACACACAAACGACCTCTTTTTTTTTGACCCCCC
ACCACGCCACAACAAAAGGAGACAAAAAAACCCCCCCCTTTTTTTCCCCC
CCCCCCGAATTAATATCCTCTTTCTAAAAAAAAAAGGGGAGACNATTTTT
TTTTCTATAACAACCCTTACCCTTTTTTCGTTTATTATGCTATGCTTGTC
TCTTCTTACCCATCTCCTTACTCTACCATTACTCCAACAAACTATATCCA
CATTTCCTTTACTTCTTCTGTACTCTCACATCACACTCTTTTTATACTAT
TTTCCCTCTAATTAATATATTCTATTTTTTCCTCCTTCCTATTACACAAT
ATATTCTATTTTCTATAATATCCAACTATTTCTCTTTCTTTTTTCCTATT
TTCATTATTATTATATTTAATATATTGATTAATTAACACAGAAAGCAACC
CAAGCAAAGGAGTTTTTTTTTTTTTTTCTTTTTCTCACCACCAACACCAA
ACACCTCCCGAGGATTTCTCATCTTCCAACTATATCCTTCATACCTTTTT
ACTTTATTTTTATCTTTTTTCTTTTTTTTTTTTTTTTATTTTTGACAGCG
CCACATCCCTCAAATACACCCTCTAATCTATTTTATTCTCTTCCATCCTC
CATACTACCACATTCCTTTATGTTATCCTATTTTTTTTTTTCTCCCCCCC
ATTTAAAGTTTATTTGAATGTATTTTATATTATTATAATAAAATTATTAT
TTGTATTAGTATATATCTTCCATAGTACGGTCCGAATTTCTNATTAACTA
TTATTCTCTTATTCTTCATTGTCTCACTAATATCTTATGATTTATTTATA
CTAATTATCTTATATACAATCCATCGTGTCTCTTATTGTTTCTCTACATC
CTACTCCTATTATTACTTATCTATTATATTGACATTCTCTCATATACTAC
TTTTCTGATACTCATTATTTTAATNCTCATCCTTATTTCTCCCCTTTTAT
TTTTTTTTTTTTTA
NNTTTAGGATAGGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTCTTAATTTGTCTTCTGACCTATACACACACAC
ATACACACCCTTCTTGATACATGTAGCACCACATGGACCTAGAGAAAAAG
AGATAGAAAGATAAAAAAAATAAATGAATAAATGGTAAGAATTTTATAGT
TCTTACAGATATTCTTATACTTGGATCTTTATAGAAATGAAATTTCTCAG
TTAAATACGTAGGTAGGAAAGTTTTAAGGTCATTAAGTTTATAAGAAAAT
AGTACTTTATAATATAATATGGTATGTATATTTAAAACCTCTTTCCCCAT
GTATAAGTTGCTTTTAGCTGTTTTGTATTTTGTGTGACGTGTTTTAATTT
TTTTTTTTTTCTCTTGATTTATTTTTCTTTTTTTTTTGCTTCTTTTGTTC
CCTTTTTTTTTCCCCCCCCCCTTTTTTTGTTTTTTTCTTTTTTTTCACAA
AAACTGTGTTCTTTCTTTTTTTTCTTCTTTTTTATTTTCCATTTTTTCTT
CTTTTATCTTTTCTTTTTTTTCTTTCATTTTCTTTTTTTTTTTCTTATTT
CTTATTCTTTTTTTTCTTTTTCTTTATTTTTTTTTCTCTTTTCTTTTCTT
TCTTATTTTCCTTTTTTTCTTTTTTTCTTCCTTCCCTTATTTTTTTTTTT
TTTTTTCTTCCTTTCTTTTTTCTTCTATTTTTTTCTTTTTTTTTATTATT
TTTTCCCTTTATTTATTTTTTCTCTTTTTTCTTTTTCTTTTTTTTTTTTT
ACCTTTATTTTTTTTATTCTTTTTTTTTTCCTTTTTTTCCTTTTTTTTTA
TTTTTTTTATTTTTTTTTTTTCCTTTTTTTATCTCATTCTTTTTTTCTTA
TTTTTTTTACTTCTTCTCTTTTTTTTCTTTTTTTCTTTTTCTCTTCTCTC
CCTCTCCTTTTATTTCTTCTATTTTCTTATTTTTTTCCTCTTTTCTCTCT
TTATTTCTTATCTTCTCTTCTTCTTCTTTTTTTTTTTTCTCTTTTTTATA
TTTTCCCTCTCCATTTATTATTTTTATATTTTATTTTATTATATTTTTTA
TTTATTAGTTATTTCTACTTCATTTTTATTTCTATTCTTTTTTTTTTCTT
CTTTTCTTTTTTTTTTATCTTTTATTTTTGTGCTCTTTTTTCCTTTCCTC
TTCTTTTTTTTTTTCTTTCTTTTATTATTTTCTCCTATTTTTTTATATTT
CTCATCTGTTGTTTCCTTCTTATTCTTATTCTTCTTTTTATCTCTCTTTA
TTTTAATATCATTTTTCATTTTCTATTCTTATTATTTATATTTTATTGTG
TATTATCGTCTATTTTACTTCTTCTCTTTCTCTTATCTTATTTCTTCTTC
TTTCATTTTTCTTCTTTCTCTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_i14.g1 MSMg01no051_i14.g1 CHROMAT_FILE:
MSMg01no051_i14.g1 PHD_FILE: MSMg01no051_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:22 2005
         (159 letters)



>mm_chr12_37616361_37616918
          Length = 558

 Score =  292 bits (151), Expect = 7e-84
 Identities = 157/159 (98%), Gaps = 1/159 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggacctagagaaaaagagatagaaagataaaaaaaataaatgaataaatggtaagaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 catggacctagagaaaaagagatagaaagataaaaaaa-taaatgaataaatggtaagaa 259

                                                                       
Query: 61  ttttatagttcttacagatattcttatacttggatctttatagaaatgaaatttctcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttatagttcttacagatattcttatacttggatctttatagaaatgaaatttctcagt 319

                                                  
Query: 121 taaatacgtaggtaggaaagttttaaggtcattaagttt 159
           ||||||| |||||||||||||||||||||||||||||||
Sbjct: 320 taaatacataggtaggaaagttttaaggtcattaagttt 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 558
Length adjustment: 8
Effective length of query: 151
Effective length of database: 550
Effective search space:    83050
Effective search space used:    83050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)