Query= MSMg01no052_a07.b1 MSMg01no052_a07.b1 CHROMAT_FILE:
MSMg01no052_a07.b1 PHD_FILE: MSMg01no052_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:30 2005
(310 letters)
>mm_chr12_33888451_33889160
Length = 710
Score = 553 bits (286), Expect = e-162
Identities = 304/312 (97%), Gaps = 6/312 (1%)
Strand = Plus / Minus
Query: 1 caatccaattcttcag-aaatcctactatgttctgaaaggac-tggcttggaaaatctat 58
|||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 694 caatccaatttttcagtaaatcctactatgttctgaaaggacatggcttggaaaatctat 635
Query: 59 ttttgtgcttttatttacttaaggtctgcatgcctggggatctttctcgtagtgctatga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttttgtgcttttatttacttaaggtctgcatgcctggggatctttctcgtagtgctatga 575
Query: 119 aactgcctctcgctgaacacacacacacacacacacacacacacacacacacacacacac 178
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aactgcctctcgctga----acacacacacacacacacacacacacacacacacacacac 519
Query: 179 acacacacttaaaagaaaaaggagaaaagacctcaccttcttgtaatagcaccaataaga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acacacacttaaaagaaaaaggagaaaagacctcaccttcttgtaatagcaccaataaga 459
Query: 239 atcgaggttcagataccaaagggacctcatgtcttggctctaaattcagtctacatgggg 298
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 458 atcgaggttcagataccaaaggggcctcatgtcttggctctaaattcagtctacatgggg 399
Query: 299 atcctttctggt 310
||||||||||||
Sbjct: 398 atcctttctggt 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 24
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_a07.g1 MSMg01no052_a07.g1 CHROMAT_FILE:
MSMg01no052_a07.g1 PHD_FILE: MSMg01no052_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:30 2005
(533 letters)
>mm_chr12_33730303_33731235
Length = 933
Score = 895 bits (463), Expect = 0.0
Identities = 514/535 (96%), Gaps = 8/535 (1%)
Strand = Plus / Plus
Query: 1 accccacctgcttcctacacacacgtacacacgtatgcactcgcgt--gcatacacacac 58
||||||||||||||||||||||||||||||||| |||||||||||| || | |
Sbjct: 205 accccacctgcttcctacacacacgtacacacgcatgcactcgcgtgcgcgt------gc 258
Query: 59 acacacacacacacacacacacacacacacatgcacacagctctgttgggacccacaact 118
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acacacacacactcacacacacacacacacatgcacacagctctgttgggacccacaact 318
Query: 119 tgaaggtgcccagggcaagaagaacgccagcccaagcatggctcttgctcatcctccagt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgaaggtgcccagggcaagaagaacgccagcccaagcatggctcttgctcatcctccagt 378
Query: 179 gtctccagagtcattactggctgaaaaatcaggaaatggagcagatgacgcaatttttac 238
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 379 gtctccagagtcattacaggctgaaaaatcaggaaatggagcagatgatgcaatttttac 438
Query: 239 ttcctcagcagtgcaaggcaccgtaaagtcctcgggacactcagtgtggattagctccat 298
||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcctcagcagcgcaaggctcggtaaagtcctcgggacactcagtgtggattagctccac 498
Query: 299 cctcagcaggcagctgaggtctccaggcgctgtctgcccctgggttttgtggcacaccag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctcagcaggcagctgaggtctccaggcgctgtctgcccctgggttttgtggcacaccag 558
Query: 359 gctcagaggtttcccactgctttgccaggctcagcgggcggcagaggcggattttgagac 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 559 gctcagaggtttcccactgctttgccaggctcagcgggcggcagaggcggattttgagtc 618
Query: 419 tttcatgtggaattgctctgcttattggggtttaaatctctggccccggcacttcattag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttcatgtggaattgctctgcttattggggtttaaatctctggccccggcacttcattag 678
Query: 479 aggagctattttggtctcatttccattgaggggcgctctttcccccctccttccc 533
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 679 aggagctattttggtctcatttccattgaggggtgctcttccccccctccttccc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
