BAC Information

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BAC

Clone NameMSMg01-052D08
Chromosome12 (Build37)
Map Location 70,930,889 - 71,109,914
singlet/doubletdoublet
Overlap geneMap4k5, Spg3a, EG622339, Sav1, LOC100040999
Upstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1
Downstream geneNin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965, LOC100041061, Frmd6, Actr10, Psma3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052D08.T7 (MSMg01no052_d08.b1)MSMg01-052D08.TJ (MSMg01no052_d08.g1)
ACCAG280757AG280758
length678677
length of high quality
(start - end)
447 (68 - 514)323 (66 - 388)
definitionCHROMAT_FILE: MSMg01no052_d08.b1 PHD_FILE: MSMg01no052_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:45 2005CHROMAT_FILE: MSMg01no052_d08.g1 PHD_FILE: MSMg01no052_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,109,468 - 71,109,914)(70,930,889 - 70,931,211)
sequence
TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCACTCTGTTCCCAAGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGC
CTCCTGAGTGCTGGGATTAAAGGTGTGTGCCATCACTGCCCAGCAAGAAT
GCAGTTTTTTAAAGTTGCTTTTTATCTTCTATGTATGATTATATGGTATG
AGAAGAACCAAAAGATAAAATGTCTTCATGTTACATCAGTTTTCCATCTT
ATATACAACATATTTCACTAGAAGCTAAAATACAAAAATGAAATACAAAG
TCTTTGTTTCAGTATGTTTTCAATACTACAGGAGAGGCAAATAAACTAGC
AAAGAAAGTTTCACCTGAGCTAATGAACCAACAGTTGCAGATATGTTTGG
AATGGAATTTAATATGGAATGGTATTTAATATTTGGCTCCTCTGACTTTG
CTGCATTTATAAGACTGGAATAATAATACTTGATCCTACAAACTATATAA
AGTAAAATCATAAGATAACATATGGCCCTGTAAATGTTAGTTATATGCTA
AGCGTTCAGGAAGGATAACCATGGAAACTAAAGGATGCCCCATATTCATT
TCAGCATGTCCTTGCGGCTTAACTATCTCATTAAAAGGCATTGATCGTTT
TCTCTATCTTGACCTCTTATTCGACTTA
ATCATGCAGTGGTAGGCTGGCGGCGCCTGGTTCCAACATTAGGTGAACTA
TAGAATTTCCCCGAAATTCTCCAGGTAACTGAAATGCACAAACATGTAAA
CAATTCAGTGATTCATTGAGGCCAGGCCCTCAAATCACTCACTGTTGAAT
AAAGACAGGTCTAGAATACGAAGAAACTACATTAGAGAAACAGAATGTGG
GTTCCTGACCACCACTACAGCATTATTTTCCCATGACATCTGCTAATACA
TCATCATTACACACAATATATTCAGACTAAACCAAAAGCCATGCCAGGAA
TGGTGGCAGATGCCTGCAAGTTCGAGGCCAACGTGGCCTAACTAGGAAGT
GCTAAGCAAGCCAGGGCTATATAACATGTCCTGTTGCAAAGCAAACAATT
GAAAAACATCACAAAACTAACAAAAAATAAATAGAAGAAAACAACCCCTC
CCCCATACCACAGAGACCCTTTAAGACATTTTCATGACATTTTTGTCAAT
AATGTAAGTCAGAGTTCTACACTGGTAACTTTAAGACAAATCTCCCTCAT
AACTGTTCACATAATCAAGTTATGAATTAGAAAGCACCTTACCTGCCTGA
ATTTGCTCCATCCACCCAAGGATCCTCACGCAATATACAGTTTGGCTCTG
ATGATAATCCCTGTGCTAGGCACAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_d08.b1 MSMg01no052_d08.b1 CHROMAT_FILE:
MSMg01no052_d08.b1 PHD_FILE: MSMg01no052_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:45 2005
         (447 letters)



>mm_chr12_71109191_71110037
          Length = 847

 Score =  833 bits (431), Expect = 0.0
 Identities = 443/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcctcgaactcagaaatccgcctgcctctgcctcctgagtgctgggattaaaggtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tggcctcgaactcagaaatccgcctgcctctgcctcctgagtgctgggattaaaggtgtg 665

                                                                       
Query: 61  tgccatcactgcccagcaagaatgcagttttttaaagttgctttttatcttctatgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgccatcactgcccagcaagaatgcagttttttaaagttgctttttatcttctatgtatg 605

                                                                       
Query: 121 attatatggtatgagaagaaccaaaagataaaatgtcttcatgttacatcagttttccat 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agtatatggtatgagaagaaccaaaagataaaatgtcttcatgttacatcagttttccat 545

                                                                       
Query: 181 cttatatacaacatatttcactagaagctaaaatacaaaaatgaaatacaaagtctttgt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cttatatacaacatacttcactagaagctaaaatacaaaaatgaaatacaaagtctttgt 485

                                                                       
Query: 241 ttcagtatgttttcaatactacaggagaggcaaataaactagcaaagaaagtttcacctg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 484 ttcagtaagttttcaatactacaggagaggcaaataaactagcaaagaaagcttcacctg 425

                                                                       
Query: 301 agctaatgaaccaacagttgcagatatgtttggaatggaatttaatatggaatggtattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agctaatgaaccaacagttgcagatatgtttggaatggaatttaatatggaatggtattt 365

                                                                       
Query: 361 aatatttggctcctctgactttgctgcatttataagactggaataataatacttgatcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatatttggctcctctgactttgctgcatttataagactggaataataatacttgatcct 305

                                      
Query: 421 acaaactatataaagtaaaatcataag 447
           |||||||||||||||||||||||||||
Sbjct: 304 acaaactatataaagtaaaatcataag 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no052_d08.g1 MSMg01no052_d08.g1 CHROMAT_FILE:
MSMg01no052_d08.g1 PHD_FILE: MSMg01no052_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:45 2005
         (323 letters)



>mm_chr12_70930689_70931411
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 322/323 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctccaggtaactgaaatgcacaaacatgtaaacaattcagtgattcattgaggccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctccaggtaactgaaatgcacaaacatgtaaacaattcagtgattcattgaggccag 260

                                                                       
Query: 61  gccctcaaatcactcactgttgaataaagacaggtctagaatacgaagaaactacattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctcaaatcactcactgttgaataaagacaggtctagaatacgaagaaactacattag 320

                                                                       
Query: 121 agaaacagaatgtgggttcctgaccaccactacagcattattttcccatgacatctgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaacagaatgtgggttcctgaccaccactacagcattattttcccatgacatctgcta 380

                                                                       
Query: 181 atacatcatcattacacacaatatattcagactaaaccaaaagccatgccaggaatggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacatcatcattacacacaatatattcagactaaaccaaaagccatgccaggaatggtg 440

                                                                       
Query: 241 gcagatgcctgcaagttcgaggccaacgtggcctaactaggaagtgctaagcaagccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gcagatgcctgcaagttcgaggccaacgtggcctaactaggaagtgctaggcaagccagg 500

                                  
Query: 301 gctatataacatgtcctgttgca 323
           |||||||||||||||||||||||
Sbjct: 501 gctatataacatgtcctgttgca 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)