BAC Information

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BAC

Clone NameMSMg01-052O20
Chromosome12 (Build37)
Map Location 87,643,615 - 87,644,128
singlet/doubletsinglet
Overlap genenone
Upstream geneNek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik
Downstream geneLOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052O20.T7 (MSMg01no052_o20.b1)MSMg01-052O20.TJ (MSMg01no052_o20.g1)
ACCAG281285AG281286
length717784
length of high quality
(start - end)		605 (61 - 665)---
definitionCHROMAT_FILE: MSMg01no052_o20.b1 PHD_FILE: MSMg01no052_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:41 2005CHROMAT_FILE: MSMg01no052_o20.g1 PHD_FILE: MSMg01no052_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAAATCCGCGGAATTCTAGCA
ACCATCACCCTACAGGCTACATCATGCCTCGAGCTGCAGCTTCCGGGTCC
GGGAGGCCCAGCTTCCCTCTTGAGTGAGCTGAGCAAGCCAGTGCTTACTA
CAAATACACCCAGCAGTCAGCCAGTCTCAAAGGATGACCTTGGGAAACCA
ACAGACTAGAAACAGCATGCCCCCTGGCAGAAGTTAACAGAAGTTCAGAG
CGAGCGAAAAGAGTTGAAATGCAGAGGGGCGACAGGAGGAAGCAGACTCT
GTACACACATGCACACATGAGCACACACGCACACACGTGCACACGCACGC
ACCACCATCAAAAGGAACCAGAAGTTCCTCTGTCCTCCAAAGTGGGACAA
CATTCAAAACAAGACCCTTGGGAATGTCTTGGAGGTGACAAAGGGCAAGT
TGTGCTCCTTCTGGGGCCTTGAAGTGAAGAGGGAGTGAACTTACCTGGGG
AAGCAAATCACACACATGTGGATGCCTAGAGCAATAGCCTGGAGTTCTGA
GCAGGCTTCCAAGGAGCATTTAACCGAGTCTGTGTGGTAGACACATAGCT
TTCTGAAAGCCCCAGGGTTGCCCACCACCACATATTCTGTGTATGTGGCG
GTGGGGGTGGGGCGTGGGGTGCCCCAAGAGAAAGTAGGTAGCTTTGCTAT
TTTCCTTGCTCCCAGAG

GTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTCTTTCTACTTCCACTATGGAGATGGGCAAATGCCCTACTTGGGGGCTT
CCTGCAGGCCCCTTGAGGAGCCAGTTCAACACTGATCAACACACTCTAGA
GAGAGAGATAGAGATAGAGATAGAGAGAGAGATAGATATAGAGTGTGTGT
TAGTTTCTTTCTCCCTTCTTTCTCTTTCCTCTCTTCTTCCTCCCTCCCTT
CTTTTTTTTTTCTTTTCTCTTCTCTTTTCTTTCCCTTCTCTTCTTTCTCC
CTCTTCCTCCTCTTCCTCTTTTTTTTTTTTTCTTCCTCTTTTTTCTTTCT
TCTTTCTTCTTTTTTTTTTTTCCTCTCCCCCCCCCCTTCTTTTCTTTCTT
TTTCTTCTTTTTTCTCTTTTTTCCCTTCTTCCTTCTTTTCTTCTTTTTTT
TCTCTTCCTTTCTTTTTTTCTTTCTCTTCCCCTTTTTCCTCCTTCTTTTT
TTTCTTTTCCTTCTTCTTTTCTTTCTTTTCTCCTTTCTCCTTCTTTTTTT
TTCTTTTCCTTTTTTTTTTTTCCCTTCCTTTTTTTTCTTTTTTTTCTTTT
TTTTCTTCTTTCTTCTTCCCCTTTTTCCTTCTTTCCTTTTTCCCTCTACT
TTCTTCCTTTTCTTTCTCTCTCTTTCTTTTTTTTTTCTCTTTTCCTTCCT
TTCCTCGCTCCCTTCTTTCCTTCTTTCCTTTCTCCCCCTTTCCTTTCTCT
TTTCTTTTTTCTTCTTTCTTTTTTTTCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_o20.b1 MSMg01no052_o20.b1 CHROMAT_FILE:
MSMg01no052_o20.b1 PHD_FILE: MSMg01no052_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:41 2005
         (605 letters)



>mm_chr12_87643123_87644128
          Length = 1006

 Score =  895 bits (463), Expect = 0.0
 Identities = 502/519 (96%), Gaps = 10/519 (1%)
 Strand = Plus / Minus

                                                                        
Query: 91   caaatacacccagcagtcagccagtctcaaaggatgaccttgggaaaccaacagactaga 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 caaatacacccagcagtcagccagtctcaaaggatgaccttgggaaaccaacagactaga 947

                                                                        
Query: 151  aacagcatgccccctggcagaagttaacagaagttcagagcgagcgaaaagagttgaaat 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  aacagcatgccccctggcagaagttaacagaagttcagagcgagcgaaaagagttgaaat 887

                                                                        
Query: 211  gcagaggggcgacaggaggaagcagactctgtacacacatgcacacatgagcacacacgc 270
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 886  gcagaggggcgacaggaggaagcagcctctgtacacacatgcacacatgagcacacacgc 827

                                                                        
Query: 271  acacacgtgcacac----gcacgcaccaccatcaaaaggaaccagaagttcctctgtcct 326
            |||||||||    |    |||  |||||||||||||||||||||||||||||||||||||
Sbjct: 826  acacacgtg----cgtgtgca-tcaccaccatcaaaaggaaccagaagttcctctgtcct 772

                                                                        
Query: 327  ccaaagtgggacaacattcaaaacaagacccttgggaatgtcttggaggtgacaaagggc 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  ccaaagtgggacaacattcaaaacaagacccttgggaatgtcttggaggtgacaaagggc 712

                                                                        
Query: 387  aagttgtgctccttctggggccttgaagtgaagagggag-tgaacttacctggggaagca 445
            |||||  |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 711  aagttccgctccttctggggcattgaagtgaagagggagttgaacttacctggggaagca 652

                                                                        
Query: 446  aatcacacacatgtggatgcctagagcaatagcctggagttctgagcaggcttccaagga 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 651  aatcacacacatgtggatgcctagagcaatagcctggagttctgagcaggcttccaacga 592

                                                                        
Query: 506  gcatttaaccgagtctgtgtggtagacacatagctttctgaaagccccagggttgcccac 565
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  gcatttaaccgagtctgtgcggtagacacatagctttctgaaagccccagggttgcccac 532

                                                   
Query: 566  caccacatattctgtgtatgtggcggtgggggtggggcg 604
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 531  caccacatattctgtgtatgtggcggtgggggtggggcg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space:   592620
Effective search space used:   592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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