BAC Information

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BAC

Clone NameMSMg01-052O21
Chromosome12 (Build37)
Map Location 113,276,082 - 113,276,449
singlet/doubletsinglet
Overlap geneTdrd9
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943
Downstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052O21.T7 (MSMg01no052_o21.b1)MSMg01-052O21.TJ (MSMg01no052_o21.g1)
ACCAG281287AG281288
length725834
length of high quality
(start - end)
376 (37 - 412)---
definitionCHROMAT_FILE: MSMg01no052_o21.b1 PHD_FILE: MSMg01no052_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:41 2005CHROMAT_FILE: MSMg01no052_o21.g1 PHD_FILE: MSMg01no052_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCTT
TCCCTTATTCCAGGAAAAAATGTCAAGAGGAAGTTTTATGTTCATTCGTT
TTCCCTTTACATCCTGTATCATTTACTGTCTTTCTGCTCTAAGAGGTGAA
TAATATTTCTAGTGCCTGTTTGATAATCATGTATTTTGTGTTAGCATTAT
ATTGAGCTGAGTGTGGACTCTTTTTTTTAAAAAAAATAGGTTTTTAAAAA
AGATTTGTGTATATGAGTGCTCTATCTGCATGTCAAAAGAGGGTATCAGA
TTCCCTTACAGATGGTTGTGATCCACCCTGTGGTTGCTGGAGATTAAACT
CGGGACCTCTTGAAGAGCAGCCGCTTTTCTTAACTGTGGAGCCCTCTCTA
AAGTCAAGGCCCCCCGCCACCCTGGGCTGGCCTCACACTTCCATAGCTGA
GGATGATCTTGAACAACAACTGCTTCTTGCTTTCACCTTAAAAATGTGTG
TGTCTCTGTCTGTGTAGCCCTGGATCTCCTAGCACTGGATCTGCAGACCA
GGCTGCCCTGCCCTGGAACCCAGAGATCACCTGCCTCTGCCCCCCCCCCC
CGAGTGCTGGCAATAAAGATGTGTACCACCACTGCTCAATCCCCTGTTAA
TTTTAACTATGCATATTTATGTGCCTGTGTCGTTGTATGTCAAACTCTCT
CCTATAGACTACTTTACCTACTTAC
ATCGAAAATGTCGACCAAAAANCGGTTTTTCGCCCCCGCNNGGGGNNGNG
AAAGATTTTCCACACGAAGGGGGGGNNGNAAAAAGGATANATATTTAANG
NATTTAATTTNTTTTTTTCCCCCAAAAAGGGGGTNCTACTTTCTTTTTAC
TCTTTCTACTTACTTGCAGATTCATGCTCTCTTCCCTCTACCTACCAATA
TTTTTAACTCCTAGCGTCACTTTCCTACTTGTCTCTTTTTCTCTCAGCTT
TCTCTCGGGCCTTCCCATGGGGCAATGCGGACAGGCGAGGCGATTACGGA
GAGTGAAGCGGGCCCCAGGATCTGCTATAGGAGGAGGATTTTTTTTGAAA
AGGGGGAGATGTGGATAGGAAATGAGAAGGGTGGAGGGTGTAGGAGAGAC
GGAGGGGGCGGGGGGGAGGGGAGGAGGTGTAGGGTGGAAGGGCTCGCGGT
GTACATTGTTCTAATTATGGAGGCGGATTGACTGGAGTACGTGGAGAAGT
GATATCTGATATGGTGTGGAGAGGTGAGGGAGAGTGTGGGTAGTAGAAAC
GGTAGAAATGGAATAAAGAGAGAGAAGTGAATGAGTGGTGGAGTAGCAAG
TAGGCGAGAGCCACAGTGAGAAACAAGTACAGAACGGAATAAGGATCGAA
AAAAGGAAGAAGCGATGGTGAAAGGAGCGGAAATGACAGCGGAGGAAAAG
CAGAGAGAGCAACAACCACGAAACTGCGACGCATAATAGCAGGCGAACGC
ATGCTCAAACATGTCGGAGACAGAGATGCGTGGGGCGAAGAACACAAGCA
GAAGAGAGACCGTACAATCAGGGGAGATGGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_o21.b1 MSMg01no052_o21.b1 CHROMAT_FILE:
MSMg01no052_o21.b1 PHD_FILE: MSMg01no052_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:41 2005
         (376 letters)



>mm_chr12_113275877_113276652
          Length = 776

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%), Gaps = 2/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctttcccttattccagga-aaaaatgtcaagaggaagttttatgttcattcgtt 64
           ||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctttcccttattttaggataaaaatgtcaagaggaagttttatgttcattcgtt 265

                                                                       
Query: 65  ttccctttacatcctgtatcatttactgtctttctgctctaagaggtgaataatatttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttccctttacatcctgtatcatttactgtctttctgctctaagaggtgaataatatttct 325

                                                                       
Query: 125 agtgcctgtttgataatcatgtattttgtgttagcattatattgagctgagtgtggactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtgcctgtttgataatcatgtattttgtgttagcattatattgagctgagtgtggactc 385

                                                                       
Query: 185 ttttttttaaaaaaaataggtttttaaaaaagatttgtgtatatgagtgctctatctgca 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttttttt-aaaaaaaataggtttttaaaaaagatttgtgtatatgagtgctctatctgca 444

                                                                       
Query: 245 tgtcaaaagagggtatcagattcccttacagatggttgtgatccaccctgtggttgctgg 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 tgtcaaaagagggtatcagattcccttacagatggttgtgagccaccctgtggttgctgg 504

                                                                       
Query: 305 agattaaactcgggacctcttgaagagcagccgcttttcttaactgtggagccctctcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agattaaactcgggacctcttgaagagcagccgcttttcttaactgtggagccctctcta 564

                    
Query: 365 aagtcaagg 373
           |||||||||
Sbjct: 565 aagtcaagg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)