BAC Information

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BAC

Clone NameMSMg01-052P02
Chromosome12 (Build37)
Map Location 9,985,573 - 9,986,041
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr35, Ttc32, LOC633030, LOC100042238, Osr1
Downstream geneLOC382567, Nt5c1b, Rdh14, LOC238074, LOC100042308, EG668435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052P02.T7 (MSMg01no052_p02.b1)MSMg01-052P02.TJ (MSMg01no052_p02.g1)
ACCAG281297AG281298
length693689
length of high quality
(start - end)
566 (40 - 605)469 (66 - 534)
definitionCHROMAT_FILE: MSMg01no052_p02.b1 PHD_FILE: MSMg01no052_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:42 2005CHROMAT_FILE: MSMg01no052_p02.g1 PHD_FILE: MSMg01no052_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTATACGACTCCTATTTTCAGAGGACCGCGGAATTCCC
CATTTATCTCTGTATCCCAATTTTTAATTGGGTTACTTGTTTTGTCCTCT
AAAGAGTCCCAGAGATCTGCGATGTGGGAGGCTTCCATGACTCAATAGGG
GTGACCTTTGCTGAAATGCCCAGTAGTGGAGAGATGAAACCTGAAGAGAC
CACCTTTGTTTTGGGGACAGGGCCCCCAGTGGAGGGATAGGATCACCCAC
CCACCTTCAAAAATTTTGATCCAGAATTGTTCCTGTCTAAAAGAAGTATG
GGGACAAAAGTGGAGCAGAGGCCAAGGAAAGGTCGTCTCTTGACTGGCCC
AACTTGGGATCCATCTCATGGGTGGGCACCAAACCCTGACACTATTACTG
ATGATATGTTACACTTACAGACAGGAACCTAGAATGGCTGGTCTATGAGA
GGCTCTACCAGCAGCTGACTGGGACAAATGCCAAGAACCCCTTAGAAAGA
CCAATAGTGTCAACTAACCCTGACTCCTTGGAACTCCCAGAGACTAAGCT
ACCAATCAAAGAACATACATAGGCTGCCCCGAGGCCCGTGGCACATATGT
AGTAGAGGACTACCTTGTCTGGCCTCACCTAGGAGAGGATATGGCTAATC
CTATAGAGACGTGACGCCCCAGGGACTGGGGGTGCCTGACAGT
TAGAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAAGCTCAAAGCATTCTTTGGAATTCAATGCCTCT
GATTGCTGTGTAAGTGCTTGATATTGGAAAGACTGCCAGAAACAAGACAG
ATGAGGAGGAGCTGCCAGCTGGGCACTGAATCAACAGTGCCAACACTGGG
AAAAAGCATGCGAGTCCATGGAGATCTCTTAGCTATTTACCAAAGGGGAG
GATTGTTTATTTCCTAGGTATCTCCCAAAGAGCCCATTTATGAGCTCCAT
TTATGACTTCAAACAAGCTATCTGGCAGAGATGTGGCAGCAAAGATAAGG
AAAGGACTAATTAATGCTCTTGCACCATGCTTCAACACCCAGATCTGTAA
TTACCCAAGTTGTGTGCTTAACCACCAAAATTTATTTTAAAATACAAACT
AGCTTTTAAGTATCTTTTAAAATGTGGCTAATAGTTTTATCTTGTTCCTG
GCACCATTTCCTCTGCTTGTTAGGGTTATAAATAGGGTATTCCACTTGGC
AAGAGTCTTGACCGTGGCATTGCTGCAATGGTTCTATAGTTACTCTAACA
AAACAGAACATAACTGGCATATTTCTCCTCAAACTTTCCTAACATTTACA
CTGCCCTCTGCATACTTTTCCTTTGACTTCACTCTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_p02.g1 MSMg01no052_p02.g1 CHROMAT_FILE:
MSMg01no052_p02.g1 PHD_FILE: MSMg01no052_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:42 2005
         (469 letters)



>mm_chr12_9985373_9986241
          Length = 869

 Score =  899 bits (465), Expect = 0.0
 Identities = 468/469 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagctcaaagcattctttggaattcaatgcctctgattgctgtgtaagtgcttgatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagctcaaagcattctttggaattcaatgcctctgattgctgtgtaagtgcttgatatt 260

                                                                       
Query: 61  ggaaagactgccagaaacaagacagatgaggaggagctgccagctgggcactgaatcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaagactgccagaaacaagacagatgaggaggagctgccagctgggcactgaatcaac 320

                                                                       
Query: 121 agtgccaacactgggaaaaagcatgcgagtccatggagatctcttagctatttaccaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgccaacactgggaaaaagcatgcgagtccatggagatctcttagctatttaccaaag 380

                                                                       
Query: 181 gggaggattgtttatttcctaggtatctcccaaagagcccatttatgagctccatttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaggattgtttatttcctaggtatctcccaaagagcccatttatgagctccatttatg 440

                                                                       
Query: 241 acttcaaacaagctatctggcagagatgtggcagcaaagataaggaaaggactaattaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttcaaacaagctatctggcagagatgtggcagcaaagataaggaaaggactaattaat 500

                                                                       
Query: 301 gctcttgcaccatgcttcaacacccagatctgtaattacccaagttgtgtgcttaaccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcttgcaccatgcttcaacacccagatctgtaattacccaagttgtgtgcttaaccac 560

                                                                       
Query: 361 caaaatttattttaaaatacaaactagcttttaagtatcttttaaaatgtggctaatagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 caaaatttattttaaaatacaaactagcttttaagtatcttttaaaatgtgactaatagt 620

                                                            
Query: 421 tttatcttgttcctggcaccatttcctctgcttgttagggttataaata 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatcttgttcctggcaccatttcctctgcttgttagggttataaata 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)