BAC Information

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BAC

Clone NameMSMg01-053I20
Chromosome12 (Build37)
Map Location 115,465,232 - 115,465,702
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIgh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4
Downstream geneEG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053I20.T7 (MSMg01no053_i20.b1)MSMg01-053I20.TJ (MSMg01no053_i20.g1)
ACCAG281736AG281737
length687649
length of high quality
(start - end)
475 (49 - 523)431 (76 - 506)
definitionCHROMAT_FILE: MSMg01no053_i20.b1 PHD_FILE: MSMg01no053_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:30 2005CHROMAT_FILE: MSMg01no053_i20.g1 PHD_FILE: MSMg01no053_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTTGTCCAGAACTTAATAAGAAATTCTTTGCCTCTGA
GAGTCATTAGATTGTAGAAGATAAAATTGAAATTTCATCTAATAGATTCA
GCATGTGAAGAAATAACTTGATATCACTACAGTTGATTTATTCCTGTTTA
GAAATCAGAGTTTTGGGGAAGACCATGTTGTCAAATGGACAAGAAAAATG
GAGTTGATATGAACTCTTATCTTTAAAACTCAATGTTTGTTTTACCTATA
TTTAGGCCTGTGTGAGAAAATCAGATCCCCTGAAACTGGAGTTACAGACG
TTGTGATCTGCAATGTGGGTGCTGCAAATTCAATCCTGGTCCTCTGGAAA
GGCAGATTGTGCTCTTAACAATTAATAGAGTCAAGCCCTCAATTCTGTTA
TCTTGATAAGTCCATTTGGTAATCTCAGGTCTCTTTGCTCTTCACAACTT
TCTTCATATAAACTCTATAGTTAATAATCAGCCCAGAAGCCTCGGGGCTC
TTGCCTAGAGAATAAGATTTTCAGAGCTCTTCTAATGGAATCTAAAGCAG
ACTTCTGAACTATCTTTTGAGGCACAGCCATGCAGCTTATGCCTAGAATT
GCCCTTATTAACCCTCCTTTGGTAACTTAGCTCAAAA
NAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATATATATTGGATATTAACCCT
CTATCGTATATAGGGTTGGTAAAGATCAATTCTCTGAAGAAAGAAATCAA
AGAACATCTCAGAAGATGGAAAGATCTCCCATGCTCATGAATGGCAGGCT
TAATATAGTAAAAATGGCCATCTTGCCAAAAGCCATCTACAAATTCCATG
CAATTCCCATCAAAATTCCAAATCAATTCTTCATAGAGTTAGAAAGAACA
ATTTAAAAATGTATCTGGAATAACAAAAAACCTAGGATATTGAAAACTAT
TCTCAACAGTATAAGAATCTCTGGTAGAATCACCATGCCTGACCTCAAGT
TGTACTACAGAGCAATTGTGACAATAATTGCATGGTATTGGTACAATGAC
AAACAGACAGATCAATGGAATAGAATTGAAGACCCAAAATGAACCCATGC
ACCTAGGTCACTTCATCATAGGTGCTAAAACCATCCAGTGGGAAAAAAAA
GACAGCACTTTTAACAAATGGTGTTGGATCACCTGGTGGTTATCATGCAA
AAACATGCAAATTTAATTCATTCCTAACCCCCTAGAAAAAATCTCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_i20.b1 MSMg01no053_i20.b1 CHROMAT_FILE:
MSMg01no053_i20.b1 PHD_FILE: MSMg01no053_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:30 2005
         (475 letters)



>mm_chr12_115465028_115465902
          Length = 875

 Score =  841 bits (435), Expect = 0.0
 Identities = 462/471 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttttgtccagaacttaataagaaattctttgcctctgagagtcattagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttttgtccagaacttaataagaaattctttgcctctgagagtcattagat 264

                                                                       
Query: 65  tgtagaagataaaattgaaatttcatctaatagattcagcatgtgaagaaataacttgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtagaagataaaattgaaatttcatctaatagattcagcatgtgaagaaataacttgat 324

                                                                       
Query: 125 atcactacagttgatttattcctgtttagaaatcagagttttggggaagaccatgttgtc 184
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 325 atcactacagttgatttattcctgattagaaatcagagtttgggggaagaccatgttgtc 384

                                                                       
Query: 185 aaatggacaagaaaaatggagttgatatgaactcttatctttaaaactcaatgtttgttt 244
           ||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||
Sbjct: 385 aaatggacaagaaaaatggagttgatatgtactcttatttttaaaattcaatgtttgttt 444

                                                                       
Query: 245 tacctatatttaggcctgtgtgagaaaatcagatcccctgaaactggagttacagacgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 tacctatatttaggcctgtgtgagaaaatcagatcccctgaaactggagttacagacatt 504

                                                                       
Query: 305 gtgatctgcaatgtgggtgctgcaaattcaatcctggtcctctggaaaggcagattgtgc 364
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 505 gtgatctgcagtgtgggtgctgcaaattcaatcctggtcctctggaagggcagcttgtgc 564

                                                                       
Query: 365 tcttaacaattaatagagtcaagccctcaattctgttatcttgataagtccatttggtaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcttaacaattaatagagtcaagccctcaattctgttatcttgataagtccatttggtaa 624

                                                              
Query: 425 tctcaggtctctttgctcttcacaactttcttcatataaactctatagtta 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctcaggtctctttgctcttcacaactttcttcatataaactctatagtta 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)