BAC Information

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BAC

Clone NameMSMg01-054A17
Chromosome12 (Build37)
Map Location 75,662,880 - 75,663,151
singlet/doubletsinglet
Overlap genenone
Upstream genePrkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054A17.T7 (MSMg01no054_a17.b1)MSMg01-054A17.TJ (MSMg01no054_a17.g1)
ACCAG282088AG282089
length760692
length of high quality
(start - end)
197 (179 - 375)280 (60 - 339)
definitionCHROMAT_FILE: MSMg01no054_a17.b1 PHD_FILE: MSMg01no054_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:08 2005CHROMAT_FILE: MSMg01no054_a17.g1 PHD_FILE: MSMg01no054_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAANNNNNNNNNNNNNNNNNNNNCCTTCGGTGTACCCCCAGATCNNNN
NNAAATTATTACTCGTGTCGCTAAANGANTCACTTTCGTACCTGNAGGGG
NGGAANNNNNANTAGCGTCACGCGCGAGGGNAGAGAAGNANCTGAAAAAA
TGTTCAACATCCTTAATCTTCCCCCAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGTGAGTGCAGGCTTGCGCAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATTTTTTTTTTTGAGGANCCAGCAANACCNCTCCTGG
GCANATATTTTTTTACCCCCCCCCCCCCCCGAAGGACACATGTTCCACTA
TGTTCATAGNAGCCTTACTTATAATAAACAAAAGCTGGAAAGAACCTAGA
TGCCCCTCAACAGAGGAATGGATACAGAAACTGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGGAACACATTCTCAA
AGAAACTCACATAATATGCACTTCCTGACAAGTGGATATTAGCCTTTATT
TTTTTTTTACTCCAGATATAAAAAATTATTTGGGTAAACCCATGAAAACT
CTAGAAACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGTATGCGCTAAGGTAAAACAACAACAGCAAAAATTTCAA
ACACCCAAAAAGCTGTTCCTGATGCAATTAAGTTAAAGCCTTGGAATGAT
ATTATGAGCAAATACTGTGAGTTTAATTTTGAGACAAGTTGAATGGGCCT
CAGGATCCCAAACATTTGATCAAATATTTTGATGAGTGTTACTGGTTTTG
GTTCTGAACTAGAAATCAAAATCTTTAAAAAAAATTCTCTTAGTTCTCAG
ATGTTTAGATGCAAATTGAGCTACATCATTAAGCCTTGTTTCTCTGAATT
ACATGCCCCAGATTACAACAATTCTTAGTTTCCATATTTGTGTAGATAAT
CTCCCACTGTTATATGTCTGTCTGTCTATTTATCTCTCTATCTCTCTATC
TGTCCATCTGTGTATATATCTATGTATCTATCCATTCATCTAACATAATC
TTTCATCTATGACCTATGTACATTTTGATTTACCTACTAGGTATCTATTC
ACTTTTTACTGATTTTCTTTAACTAGAGATCTCTAATACTAACATATAGT
GGAGTGTGAATATATACATGGTTATGGAGGCTGAGAAACTCACAGTTCTC
AGTTAGAAGACAGCAGTATAGTTTGTCCAGAATCTGAAGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_a17.g1 MSMg01no054_a17.g1 CHROMAT_FILE:
MSMg01no054_a17.g1 PHD_FILE: MSMg01no054_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:08 2005
         (280 letters)



>mm_chr12_75662735_75663414
          Length = 680

 Score =  470 bits (243), Expect = e-137
 Identities = 267/279 (95%), Gaps = 7/279 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtatgcgctaaggtaaaacaacaacagcaaaaatttcaaacacccaaaaagctgttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 417 ttgtatgcgctaaggtaaaacaacaacagcaaaaatttcaaacaaacaaaaagctgttcc 358

                                                                       
Query: 61  tgatgcaattaagttaaagccttggaatgatattatgagcaaatactgtgagtttaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgatgcaattaagttaaagccttggaatgatattatgagcaaatactgtgagtttaattt 298

                                                                       
Query: 121 tgagacaagttgaatgggcctcaggatcccaaacatttgatcaaatattttgatgagtgt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgacacaagttgaatgggcctcaggatcccaaacatttgatcaaatattttgatgagtgt 238

                                                                       
Query: 181 tactggttttggttctgaactagaaatcaaaatctttaaaaaaaattctcttagttctca 240
           ||||||||||||||||||||| |||||||||||||||        |||||||||||||||
Sbjct: 237 tactggttttggttctgaactggaaatcaaaatctttg-------ttctcttagttctca 185

                                                  
Query: 241 gatgtttagatgcaaattgagctacatcattaagccttg 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gatgtttagatgcaaattgagctacatcattaagccttg 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)