Query= MSMg01no055_f04.b1 MSMg01no055_f04.b1 CHROMAT_FILE:
MSMg01no055_f04.b1 PHD_FILE: MSMg01no055_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:42 2005
(628 letters)
>mm_chr12_42195677_42196705
Length = 1029
Score = 1162 bits (601), Expect = 0.0
Identities = 619/625 (99%), Gaps = 3/625 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgcatggataacatgcattttacattttagtgtccaaatggaattttgaaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gaattcatgcatggataacatgcattttacattttagtgtccaaatggaattttgaaaat 769
Query: 65 acacatgctttaattgggctgctgctgcagcaataatcctt-aatacaagattcaataaa 123
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 768 acacatgctttaattgggctgctgctgcagcaataat-cttaaatacaagattcaataaa 710
Query: 124 cgtgttttcatgctctgattaaatgtcaaggccacagatttgttatttcagatccagtga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cgtgttttcatgctctgattaaatgtcaaggccacagatttgttatttcagatccagtga 650
Query: 184 gcaataatttcattggataataatgaactcccaaagatttattcgaaacactcagctgcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gcaataatttcattggataataatgaactcccaaagatttattcgaaacactcagctgcc 590
Query: 244 cattaaaaagctctgattcatcacaagaatttcaaccctgcagatagtattatggcacct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cattaaaaagctctgattcatcacaagaatttcaaccctgcagatagtattatggcacct 530
Query: 304 aggacacaaagcacacactttgaagtacactttactcacgtcctatgtgcagtgccagct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aggacacaaagcacacactttgaagtacactttactcacgtcctatgtgcagtgccagct 470
Query: 364 gattgaacaccaactgtatttgcataatcctactcacaagagatacaacttgaacttgca 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 469 gattgaacaccaactgtatttgcataatcctactcacaagagatacagcttgaacttgca 410
Query: 424 tacatttttttt-ccttcacagggtatttgtacatttcattagcagggtgttcttctctg 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tacatttttttttccttcacagggtatttgtacatttcattagcagggtgttcttctctg 350
Query: 483 atgttcactgtcttaagtgtcactttctggcaattccaatctagccacgctacactaaag 542
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagttcactgtcttaagtgtcactttctggcaattccaatctagccacgctacactaaag 290
Query: 543 atgcagcctcacaggttgtcagtataaccattatttgatcactattgtgtggagtaagcg 602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 289 atgcagcctcacaggttgtcagtataaccattacttgatcactattgtgtggagtaagcg 230
Query: 603 agggctggcctccagccacgtcagg 627
|||||||||||||||||||||||||
Sbjct: 229 agggctggcctccagccacgtcagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_f04.g1 MSMg01no055_f04.g1 CHROMAT_FILE:
MSMg01no055_f04.g1 PHD_FILE: MSMg01no055_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:42 2005
(617 letters)
>mm_chr12_42135206_42136222
Length = 1017
Score = 1147 bits (593), Expect = 0.0
Identities = 611/617 (99%)
Strand = Plus / Plus
Query: 1 tattgtttaaaaaacatacttgtgtacagaccattagttcctttgaacatgtctttgctt 60
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tattgtttaaaaaacatgctggtgtacagaccattagtacctttgaacatgtctttgctt 260
Query: 61 gagagttaacatgaggttattaaggtaagccctaatccagtatgactgtatccttataaa 120
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gggagttaacatgaggttattaaggtaagccctaatccagtatgactgtctccttataaa 320
Query: 121 aatgaagatttagacaatgagatgcagacacagggagagcatcatctgaagattacggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaagatttagacaatgagatgcagacacagggagagcatcatctgaagattacggtt 380
Query: 181 atgctacttcaatgaaaggaacatcaaagattgccaaaaatctactagatggagaaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctacttcaatgaaaggaacatcaaagattgccaaaaatctactagatggagaaaggt 440
Query: 241 gagcaacagattgtcctggacaacccacagaagaaagcagctcccgagactccctggttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gagcaacagattgtcctggacaacccacagaagaaagcagctcccgagactccttggttt 500
Query: 301 cagatttccagctgccagagagatacaaacatttctggtttttaagcactctcgtttgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagatttccagctgccagagagatacaaacatttctggtttttaagcactctcgtttgta 560
Query: 361 attgaatgttgggtttgcctcaataaatcaatgcagatttaattcagtagctgttgattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgaatgttgggtttgcctcaataaatcaatgcagatttaattcagtagctgttgattt 620
Query: 421 agaactcgtttaaaaagccatagtaactttgcttttagtgtcagttttagagaccatggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaactcgtttaaaaagccatagtaactttgcttttagtgtcagttttagagaccatggt 680
Query: 481 attcagtcacgacaaattctttcccatatttaagaaggcaaggaaaggccagaaaacact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attcagtcacgacaaattctttcccatatttaagaaggcaaggaaaggccagaaaacact 740
Query: 541 tggcagttgagcttaagaagtctgctcatagatcttaagatcatctttagggctggtttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggcagttgagcttaagaagtctgctcatagatcttaagatcatctttagggctggtttt 800
Query: 601 caagttaaggaagtcag 617
|||||||||||||||||
Sbjct: 801 caagttaaggaagtcag 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
