BAC Information

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BAC

Clone NameMSMg01-056A11
Chromosome12 (Build37)
Map Location 98,637,654 - 98,637,891
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056A11.T7 (MSMg01no056_a11.b1)MSMg01-056A11.TJ (MSMg01no056_a11.g1)
ACCAG283539AG283540
length705702
length of high quality
(start - end)
406 (124 - 529)241 (125 - 365)
definitionCHROMAT_FILE: MSMg01no056_a11.b1 PHD_FILE: MSMg01no056_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:35 2005CHROMAT_FILE: MSMg01no056_a11.g1 PHD_FILE: MSMg01no056_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCCTCCTATACTTGAAGAATACTTTCAGAAAAGTGACTGGATATAA
GACTAACTCAGAATAAAAAACCCAAAAAGGAAAAAACCCAAAAAAACATC
AGTAGCCTTTCTATAAACAAATGACAAATGGACTGAGAAATAAATCAGGG
AAGCACTACTTTTCTCAGTAACCTTAAATAATATCTTGGAGTAACACTAA
CCAAGTTAAAAAAAAAACTTAAATGATAAAAACTTGACGTCATTGAAGAA
ACAAATTAAAGAGTATATCTAAAGATGGAAAGATCTCCTGTGCCCATGGG
TGGGTAGGATTAACATAGAAAAAATGTCCATTCTATTAAAAGCAATCAAC
AGATTCAACGTAATTCTCATCAAAATTTCAGCACAATTATTGGTGGATCT
CAAAAGGGCAAATATCAACTTCATATGGAAAAACAAAAGACCCAGGATTA
GATAAAAAAAAATCCTGAACAATGAAAAATAAACAATAAGAAAAAAGAAA
AACCCAAACCTTCTGTAGGTATTACTATCCCTGACTTCACAATGTTCTAC
AGAGTTAGAGTAATAAATACCACACGATATTGGCATAAAATCATCTGAGC
TAAATGGAACTAAATGAATTGCAGAACCAGAAATAAATGCAAAAACCTAT
GAAAN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCCAAAGGAATTCCTTTTCTTTCCCTTTCATTTCTCAG
GTTATGGGTCATAGGTTTCTCCCAATCTTCTTGTTTTTATCTTTTTCTGG
TAAAGACTTTATTTAGGGGGGTTGTAGTCAATCATTTCATTGGTTGCTCA
ACAGTTTAAATTAAGAATAGGACTAGCTGTTGAGAGATAAGCATAAGCAA
ATATGTACATTCACAAATAAAGATAATGGTGGTACCAATAATAAATAATA
ATTCAGGATAATGCACCATTTATTATTCATTATTATATATAAACTCTATA
TTTTCCTTAATAATAATATATTTATAAACATATATCATATACTTATATGA
TTAATGTATTAATAATGTATTAATAAACATATATATTTATAAGTAGATAT
TTTTAATAAATGCTATATAGCTTCCACCACTGTGTAATTTTTGTTTGATC
ATTTTCTTTTATGTTTTATAATTATACTCTTGGGCAATTTTATATGTTGA
TATTAAACTTCATTGTCATACTCTGTCCACTAATGCCCTAACGATCTGTT
CTCCCCCTTCTACCTCACAGCTCTCGCTCTTCCCCCCAAGAATGTCTCCC
CCTATCATGTCCCCTTTCCCCTCTTTTCGTTGCGGCAGGCGCTTTGGAAC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_a11.g1 MSMg01no056_a11.g1 CHROMAT_FILE:
MSMg01no056_a11.g1 PHD_FILE: MSMg01no056_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:35 2005
         (241 letters)



>mm_chr12_98637450_98638091
          Length = 642

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%), Gaps = 1/238 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   tcttgtttttatctttttctggtaaagactttatttaggggggttgtagtcaatcatttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tcttgtttttatctttttctggtaaagactttatttaggggggttgtagtcaatcatttc 264

                                                                       
Query: 65  attggttgctcaacagtttaaattaagaataggactagctgttgagagataagcataagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attggttgctcaacagtttaaattaagaataggactagctgttgagagataagcataagc 324

                                                                       
Query: 125 aaatatgtacattcacaaataaagataatggtggtaccaataataaataataattcagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatatgtacattcacaaataaagataatggtggtaccaataataaataataattcagga 384

                                                                     
Query: 185 ta-atgcaccatttattattcattattatatataaactctatattttccttaataata 241
           || ||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatatgcaccacagattattcattattatatataaactctatattttccttaataata 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)