BAC Information

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BAC

Clone NameMSMg01-056B21
Chromosome12 (Build37)
Map Location 78,214,872 - 78,215,191
singlet/doubletsinglet
Overlap genenone
Upstream geneEsr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765
Downstream geneLOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056B21.T7 (MSMg01no056_b21.b1)MSMg01-056B21.TJ (MSMg01no056_b21.g1)
ACCAG283606AG283607
length757717
length of high quality
(start - end)
76 (68 - 143)432 (69 - 500)
definitionCHROMAT_FILE: MSMg01no056_b21.b1 PHD_FILE: MSMg01no056_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:41 2005CHROMAT_FILE: MSMg01no056_b21.g1 PHD_FILE: MSMg01no056_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGATCCGCGGATTCTC
CTAGATGTCCCAGAGGGACTATAGGACCAAGGATGGGCAGTTCCAGCTTC
TAGTTGTATACACTCTCCGGGGGTGGTGGAGGGGGTGGTGGATNCTACCA
TCCAAGTTTCTCCCCTCCTTCTCTCTTCTCTCACCTTTCTTACCATATCA
TATCACCAGTCCCTCTTACAGTACATTTCTCACTCACTATGTTTTCCTTG
TCCATTTACTCTTACTTATATTTTTTAACATTTATAACTATCTCTCATAC
TTCCTCGTTCCCCCTTTTTTTTTCTTTCCCCCCACCCATCTCATTCACAG
CCCAATCCGTTTTTTTCCCCCCCCCCCCCCCACCTTGACGTGTATTATAT
CAGTTCTAATTCGTACGTTCTTATAAAAAATAAAACATATTCGTGCGGCT
GTCGATCCATCTTTCCGATTTGCTCGCCGCCGCTTCTCCCTGCGTTTACT
TTGTATCTCCCTTAACATCTATCCACCTACTTTAACCCCCTCTATGCTCC
TTCGCGTTTCGTCTTATTCCTAGCCTTGTTCTAACAACGCTTTTCCCAAC
CTATATCACCCTCTCCCCCCTCTTTTTTTTTCCCATTCGTTTTATGTTTT
TTTTTTTACCATCCCAACCTCTCATCCCCTTTTACCCCCATCTCCCTCCC
TTACCCTATTTCTCCTTTCATTTTTTCCGTCTTCTTTTCCCGCCTTTTTT
TTCCCTT
GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTGTAGGCCTAGACCTTCAGGTACAAAATT
TGGCATTACAATGCATAGCACCAGACCAAACCTCAACAGAAGACAGCAGT
AAGCTGGCAGGCTTACTGACAGCAGCAGCTGAGAACTTAACGTGTTGAGA
CAAGGCAGAAAGGGAACTAACTGGGAATGGCCTAGGCTTTTGAAACCTCA
AAGCCTGCCCCTAGTAACACACCTGCTCCAATAAGGCCACACCTCTTAAT
CCTTCCCAAACAATTCTACCAGCTGTGGACCAAGCATTAAATTGTATGAG
CCTGTCTGGGTCATACATTAAAATCACCATGTTTAGTAACCTTGTGGCCT
TGAATTAGTTCACTCCCCTAAGATAGAATCTCCCAAGTGGTAGGAAGTGA
ATGGCTCTGAACAACCCAAACAACTCAGTGCTCAGAGTGGCTGGGCAAGG
CTCACAGCAGCAAGAATCCTGGCAGCCTCATACTTTTCTTGACTTATTAT
ATACATGTGTGTTTGTGTTTGTGTGGGTGTGTGCATGTATGCTGATACAC
TCCCCCCCTCCTATCCCATCATCACCTCCTCCTTTCCTACTCCACCCAAC
TATTACTTATTCCCATCCCTTTCTACTCATTCTCCCCTTATTCATCTATA
CACCCCCTTCTACCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_b21.g1 MSMg01no056_b21.g1 CHROMAT_FILE:
MSMg01no056_b21.g1 PHD_FILE: MSMg01no056_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:41 2005
         (432 letters)



>mm_chr12_78214360_78215191
          Length = 832

 Score =  596 bits (308), Expect = e-174
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 113 gagaacttaacgtgttgagacaaggcagaaagggaactaactgggaatggcctaggcttt 172
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 832 gagaacttaacgtgttgagacaaggcagaaagggagctagctgggaatggcctaggcttt 773

                                                                       
Query: 173 tgaaacctcaaagcctgcccctagtaacacacctgctccaataaggccacacctcttaat 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tgaaacctcaaagcctgcccctagtaacacacctgctccaataaggccacacctcttaat 713

                                                                       
Query: 233 ccttcccaaacaattctaccagctgtggaccaagcattaaattgtatgagcctgtctggg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ccttcccaaacaattctaccagctgtggaccaagcattaaattgtatgagcctgtctggg 653

                                                                       
Query: 293 tcatacattaaaatcaccatgtttagtaaccttgtggccttgaattagttcactccccta 352
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tcatacattaaaatcaccacgtttagtaaccttgtggccttgaattagttcactccccta 593

                                                                       
Query: 353 agatagaatctcccaagtggtaggaagtgaatggctctgaacaacccaaacaactcagtg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agatagaatctcccaagtggtaggaagtgaatggctctgaacaacccaaacaactcagtg 533

                               
Query: 413 ctcagagtggctgggcaagg 432
           ||||||||||||||||||||
Sbjct: 532 ctcagagtggctgggcaagg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)