BAC Information

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BAC

Clone NameMSMg01-056E10
Chromosome12 (Build37)
Map Location 48,200,392 - 48,200,681
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664952, Nova1
Downstream geneLOC100039190, EG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056E10.T7 (MSMg01no056_e10.b1)MSMg01-056E10.TJ (MSMg01no056_e10.g1)
ACCAG283724AG283725
length699712
length of high quality
(start - end)
244 (62 - 305)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no056_e10.b1 PHD_FILE: MSMg01no056_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:54 2005CHROMAT_FILE: MSMg01no056_e10.g1 PHD_FILE: MSMg01no056_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTAAACGACTCCACTTCGCACCCGGATCNCGCGGAATCTCAATA
GCTACACATTGAATGGCTGAGAAGCACCTAAAAAAATGTTTAACATCCTT
AGTCATCAAGGAAATGTATCAAAACAACCCTGAGATTCTACCTCACACCA
GTCAGAATGGCTAAGATAAAAAACTCAGGTGACAGCAGATGCTAGTGAGG
AGGTGAAGAAAGAGACACTCCTCTATTGCTGGTGGGATTGTTAGCTTGTA
CAACCATTCTGGAAAACAGTTTGTCATTTCCTCAGAAAATTTGACATTTT
ACTTTCATAGTATCCAGCTATATCTCTCCTGGACATATATCCTGTTTATG
CTCCCCCCCCGCCCCTAAGGACACATGCTCCACTTTGTTCACAGTAGCCT
AATTTATAATAACCAAAAGCTGGAAAGAACCCAGATATCCCTCAACAGAG
GAATGGATACCGAAAATGTGGTACATTTACACAATGGAGTACCACTCAGC
TATTAAAAACAATGCAACCACCAAATTCTTAGACAAATAGATGGATCTAG
AAAATATAACTCTGAGTGAGGCAACCCAGTCACAAAGGAACCCACATGGA
ATCCATTCACTGATAAGTCATATTAATCCCAGAATCTTGTTATTTTCTTG
AAACAACTCTCCATACCACATGCACGCTCAACAAAGATGATCTTCCCTT
CCCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTATTTCCTCCAAGGAATTCAGGAGTCAACATTTAGTCTCC
TATAAACATTTAGCCTACTTGATAATTAAATTTTCAAGCAATGCTATGCA
ATTTGTTCTAAGAAATATTGTTCTCTATAACGGAAGGGAATGGCTGACAA
ATTATAGTATTCAAAATGAATTTAGAGGACATATACCTGAGAATATTAAT
AGTTAAATTTGTCATTATAAAGCTCATTCTTTATCATATAAAATGTCTCA
TATAAATAAATTACTTTAGAAACTGTATGTCATACAAGTGGGAGGAAAAA
AATCTATTATTTAGTAGAGACAATATTATGCAGCAAGGGGATTCTCCAGA
TATTCTTGAAATCACAGTATCAGGAGATGGATGTCATATAAAGAGAATAA
ATATAGTCTCTGACATTACAAAGGAAAAACTTTTGCACAGGCAGCCTCAA
GGTTTGGACAAATGACATCAAATAGTGATTGGTTCTTTGAAAATTTGCTA
GAATTCAATCACATCGTCAGCGCGGAAAAACAAATTGTTCTCATTGTTTT
CTTTCTCCATGTGCCTACATACAGATGTGGGTCACCAAATATCACTGACC
ATAGAACTAAAACAGAAAAAACCCTGTGTGTGTGAGTTGTGTGTATGTGC
GCCCCACAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_e10.g1 MSMg01no056_e10.g1 CHROMAT_FILE:
MSMg01no056_e10.g1 PHD_FILE: MSMg01no056_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:54 2005
         (290 letters)



>mm_chr12_48200192_48200881
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaggagtcaacatttagtctcctataaacatttagcctacttgataattaaattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attcaggagtcaacatttagtctcctataaacatttagcctacttgataattaaattttc 431

                                                                       
Query: 61  aagcaatgctatgcaatttgttctaagaaatattgttctctataacggaagggaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aagcaatgctatgcaatttgttctaagaaatattgttctctataacggaagggaatggct 371

                                                                       
Query: 121 gacaaattatagtattcaaaatgaatttagaggacatatacctgagaatattaatagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gacaaattatagtattcaaaatgaatttagaggacatatacctgagaatattaatagtta 311

                                                                       
Query: 181 aatttgtcattataaagctcattctttatcatataaaatgtctcatataaataaattact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aatttgtcattataaagctcattctttatcatataaaatgtctcatataaataaattact 251

                                                             
Query: 241 ttagaaactgtatgtcatacaagtgggaggaaaaaaatctattatttagt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttagaaactgtatgtcatacaagtgggaggaaaaaaatctattatttagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)