BAC Information

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BAC

Clone NameMSMg01-056I08
Chromosome12 (Build37)
Map Location 67,457,614 - 67,457,736
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040700, EG238217
Downstream geneMdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056I08.T7 (MSMg01no056_i08.b1)MSMg01-056I08.TJ (MSMg01no056_i08.g1)
ACCAG283912AG283913
length713728
length of high quality
(start - end)
123 (129 - 251)192 (126 - 317)
definitionCHROMAT_FILE: MSMg01no056_i08.b1 PHD_FILE: MSMg01no056_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:13 2005CHROMAT_FILE: MSMg01no056_i08.g1 PHD_FILE: MSMg01no056_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAA
TGCCCATTCATGAGCCACTGGGAGGATAGAGAAGAACATGAAACACACAG
AAAAGTTTACCCACAGGAGAAAATCAGGCTGTGTATTAAAGAAGTCTGAA
GCACAGCATTCACATATATGATTAAATATTACAAAAAAGATGATGAATTT
CTATTGTCTTACATCTATGAAACCTCTAGGCTAACAGACCAGAGTGCCTA
GCATTGTTTTAATGGATGTAAATGTATAGATATGCAACGCACTGCACGAA
ATAGGAATATATATTATAGTAATTCAAGCATCTGATATCTAATATTTATA
ATTTCTTACCGACCCCTAATGATGTGGAGAATGAAAAAAAGATGTATGCC
TACCACTACCAGACATACTTATTGAATAATCTATTTGTTAATCACATATG
CATTTATTTACTCAACTTAATGAAAAGTGAAACCTACTTCCTGTACTATG
CCAACTCCTGCAATGAATACACGACCAGGCCAGAAAACCTCCTTGTCTTG
CTCACTTCTTACGTTACCTTTGCCATTACCATCGCTTGTTGTTCACACTC
TATCCCCACATACTCTTCCTATACCATCTATCCCCGCCATAATAATTATT
CTTCCAACCTTTCTTTCTGGTAATTTAATTATAAACATATTCATTTATTC
CTCGCTTGTTTTG
CCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCTTCAATAGCTCTCTGTTT
CACTTGGTCGAAATTCCATTTCTCTGAGCTGCTTAGCCTATGACCCTCGG
GGTCATCCCTGATTCTTCTTTTCTCATAACACTAATCAGAGTCTCAAAAC
TAACCAGTAAACAGATTTAACTTTAATAATATGACTTTAGAAGCAGAATA
GTTCCTTACGGAAGAAGGAATATAATTTTTTAAAATTTCTTTTAATTGGA
TATTTTATTTGTTTACATTTCAAATGCTCCTCCCTTTCCTGGTTTCCCCT
CTGCAAACCCCCTATCCCATCCCCACTTATCCTGCTTCTGTGAGGGTGCT
CCCCCAGCCACTCACCCATTTCTGCCTCACTGCCCTAGCATTCCTCTAAG
CTGGGGTATCAAGCCTTCACAGGATTAATGTCCTCCCCTCCCTTTGATGC
CTGATAAGGCTCATTCCGTTCCTCCAGTCCTTCCCCTAACTCTTCTTTTG
GGGTCCCCTTTGCTCAGTCTGATGGTTTGGCTATGATCATCTGTGTCCGT
ACCCGTTCAGGATCTGCTTAAACCCCCCTCACGAAACACGCTGCCTCCTG
GCTTTTTTTTTGTTTTTTGTTTTAACCGGCTCTACGCCGTTTTTCAGGTT
TCTTCTGGAGCCCCCTCTTCCAGGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_i08.b1 MSMg01no056_i08.b1 CHROMAT_FILE:
MSMg01no056_i08.b1 PHD_FILE: MSMg01no056_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:13 2005
         (123 letters)



>mm_chr12_67457414_67457936
          Length = 523

 Score =  238 bits (123), Expect = 9e-68
 Identities = 123/123 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgtattaaagaagtctgaagcacagcattcacatatatgattaaatattacaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgtattaaagaagtctgaagcacagcattcacatatatgattaaatattacaaaaaa 260

                                                                       
Query: 61  gatgatgaatttctattgtcttacatctatgaaacctctaggctaacagaccagagtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgatgaatttctattgtcttacatctatgaaacctctaggctaacagaccagagtgcc 320

              
Query: 121 tag 123
           |||
Sbjct: 321 tag 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)