BAC Information

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BAC

Clone NameMSMg01-056K17
Chromosome12 (Build37)
Map Location 98,991,651 - 98,991,890
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277, LOC382626, LOC100039743, LOC667732
Downstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056K17.T7 (MSMg01no056_k17.b1)MSMg01-056K17.TJ (MSMg01no056_k17.g1)
ACCAG284023AG284024
length817684
length of high quality
(start - end)
43 (73 - 115)242 (67 - 308)
definitionCHROMAT_FILE: MSMg01no056_k17.b1 PHD_FILE: MSMg01no056_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:24 2005CHROMAT_FILE: MSMg01no056_k17.g1 PHD_FILE: MSMg01no056_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCACGGATCCGC
GGAATTCTATAGTATCGTACTTTATAAAAATAAATTGTGAAAGGGAAGAT
AAAATGGAGGGCCAATATTCGCCCCTGGGTGGGTAGAGGAGTGGTGTTCC
CTTTTTTCTTCCTCTCTTTTCCTCCTCTTCCTCCCCCCCCCCCCCTCTCC
TCCTCCCCCCCTCTCCCTTTCTCCCTTCTCCCTCCTCCCTTCTCCCTCCT
CTTCTTCTTTCCCCCCCTTTTCTCTTTTCTCCCCCTCTCTTCCCCCCCCC
CCCACTCCTCCACCCCCTTTTTTTTTTCTCCCTTTTTTCTTTTCTCCCCC
CCCCCACCTACATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTCCCCTT
TTTTCTTTCCCCTCTTTCTTCTCCCCTCCTCTTTCCTCCCCCTCACCTTT
TCCCCCTTCTTCTCCCTTCTCCCCTTCTTTTCTCCCCTCTCTTCTTTCTT
TTTATTTTATTCTTCCTTCCCTCCCCTCTCCTCCCTTCTCTCTCTTTCCC
CCTCCTCCTTCTCCTTTTTTCTTCTTTCTCTTTTTTTCCTTCTCTCCTCT
CTTCCCTTCCCCCCCCTTTTTCTCCCTTCTCTCTTTTTTTTCTCTCCCTC
CCCCCTTTTTTTTCTTCTCTCTTCTCTCTTTTCTTTTCCTCCCTTTCCCC
CCCCCTTATCCCTCCCCCCACCCTTATTCTCCCCCTCTTTCTTTTTCCCT
CTCTTCTCTCTCCCTCTTCCCCCTCTTTTTTTCTTTTTCCTCCTTCCCTT
TTTCTTTTCCCCTTTTN
ACATTGCAGTGGGAGGCCGGGAGGCGCCTGTTCTCACCAGTAGGTGAACT
ATAGATTACAAGAGAAATCTCTTGTTCTTCTGGGGAAATTTAATTTGCTG
CTGAAGACTGGATCAATCACCTCTTTGGTTCATTGGCTGTCATGGCTGTA
GGTGAATTTAAGGCTCCTTTTGGTATTTCACTTCATTCCATTTTTATCCA
TACTGTTTAGTTCCATGACTCCAGCCTTTCAAAATATTTTAAACTATTGT
GTGTGTGTGTGTGTGTGTCTGCACAGACATACCACAGTGTACTTGTGTAC
TTATATATCTATTTGGCAACTTATGAAGCCTATTCTTTCTTTTATTACTG
TGTGTTCCCTGCCATGCAAGGCAGTTTCAAGCGTGTACAGCAAGCACCTT
CAGCTGCTAAGCCATCTTACTGACTCAACTCTAGCTGCTAAATGTGTTTA
TGTAAGCCCATTACCAAAATATGTTCCTGTAAAACATAGATTCCTGTTTG
TTTGAATAAAGTTCTATTTGCACATAATATTCAACTAATTTCATTTTTAT
TTTTATTCCCAACAATGTATTTCATAATATCTATCTCTTTTGTATGTATA
GAAACCTGAACCTTACTCTATTTTATGTCTTGACCATATTTTAGCTTTCT
ATTACCCAGCGATGTGTGTGTGCGTGAGTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_k17.g1 MSMg01no056_k17.g1 CHROMAT_FILE:
MSMg01no056_k17.g1 PHD_FILE: MSMg01no056_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:24 2005
         (242 letters)



>mm_chr12_98991510_98992151
          Length = 642

 Score =  422 bits (218), Expect = e-122
 Identities = 234/240 (97%), Gaps = 2/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctcttgttcttctggggaaatttaatttgctgctgaagactggatcaatcacctctttg 61
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tctcttgttcttctggggaaatttaatttgctgctgaagactggattaatcacctctttg 322

                                                                       
Query: 62  gttcattggctgtcatggctgtaggtgaatttaaggctccttttggtatttcacttcatt 121
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcattggctatcatggctgtaagtgaatttaaggctccttttggtatttcacttcatt 262

                                                                       
Query: 122 ccatttttatccatactgtttagttccatgactccagcctttcaaaatattttaaactat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatttttatccatactgtttagttccatgactccagcctttcaaaatattttaaactat 202

                                                                       
Query: 182 tgtgtgtgtgtgtgt--gtgtgtctgcacagacataccacagtgtacttgtgtacttata 239
           |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtgtgtgtgtgtttgtgtgtctgtacagacataccacagtgtacttgtgtacttata 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)