BAC Information

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BAC

Clone NameMSMg01-057B10
Chromosome12 (Build37)
Map Location 41,344,208 - 41,344,398
singlet/doubletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057B10.T7 (MSMg01no057_b10.b1)MSMg01-057B10.TJ (MSMg01no057_b10.g1)
ACCAG284334AG284335
length774743
length of high quality
(start - end)
195 (98 - 292)170 (75 - 244)
definitionCHROMAT_FILE: MSMg01no057_b10.b1 PHD_FILE: MSMg01no057_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:55 2005CHROMAT_FILE: MSMg01no057_b10.g1 PHD_FILE: MSMg01no057_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTNNNNNTTTTTTTTNNTTTTTTTTCTCCCCCCCCCNCNNCCAATTAAN
CACCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCG
CGGAATTCTCTCTTAGATACCCAGACCCCTTCTTTGTGTCACCAGGGACA
AAGAAATTCCATTCTTTTTATTCCTGCTCCATATTCTAGTCATCTCAGAT
GGTCAGCTTGTAACAGGCAAGGACCAGCCAGTATTTATGTGGCTCGAAGT
GGATTGTGGCAAGTGGAATTCTTGTAAACCCTACTTTGACCGCGCTGGCG
ATATCGTCTGCAATTTGCAGCCACATGTCTCACTTATAAAACTTTTGAGT
AATCTGGTTTGAGTTTCAGGTTTTAAAAGTCCTAGAACTCTGGGATTGAA
TTTCTCTGCACCCATCTTATAAGCCTGAAAATATTTCTTTTGTTGTTGTT
CTTTACATAAAGAAATGGTATTCCCCGCCCCTAAGAAATGAATCCCTATC
ACGTAGCATGATTTAACTTCCCTTTGCCTCTGACTTAGAAAATATTTAAT
AGTTCAAATCTGACATTATATCTTGAATATATTTAGATCTTAGAAAAGTG
CCTGTGTACACTGAACTATCATCTCTACGTATAGGAAAGATAGTGTTCGT
GAACAATATGACCGTGCTCGGGACATTTCTATCAATCACCCCCGCCACGT
CATATATTTAAGTGTTTTGGCACTTGAATTATTACTTTAAGGACCTTTAT
ATAATTGACATCCGTACCTATCCC
ACTGCATGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATGTAAATCAAGTGATGCTATGTG
ACCTTGCTCCTTAATTTAAAACTATTGGTTAAATAAAGATGCCAACAGCC
TATAGCTGGGCAGAAGAGAGGTAGGTGGGATTTTGGTTCCCAGGCTTGGG
ATCTGAGGAAGGGCCATGAGGTGAAGAAGATGGTGGAGAAAGCAGAAGAC
AACATAGGGTAGGTGAGTCGTGATAGCATGGCCACAGGGCTAGCCAATTG
CAGTTTAGAGCTGCCCAGATAGAACATAGCCAGTTATAACTCAGCATTTA
GAAATGCATAGCTTAGAGGCTAGATACAGCTGGCATTTCAGTTCATGAGG
ACACTTTTGCAATTTACCGTCCCACCACTTCTACTTAATTACATACTATA
GACCCAGCTCACTAGGACAGCGCTCTTTACTTCATGCTATGCTCCTTGAC
TTGCTTTGTCGTCTAAGCTCGAATGTCATCTCTCTTCTCTCTCTTCTTCT
CCTTCTGTCTCTCGGCTTCTCTCTTCCTCTTCTTCTTTGTTTTTGTTTCC
CTTCTTCTCCCCTCTTTCTCCCCTACTCTTCCACTCTTCATCCTCCTTTC
TCCTCTTCACTCTCGCATCATACTCACTCTTTCTCCATCTACTCCTTCCC
TTCTCTCACTCTCTCTCCTTCTTCCTCTTTCCTCCTTCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_b10.b1 MSMg01no057_b10.b1 CHROMAT_FILE:
MSMg01no057_b10.b1 PHD_FILE: MSMg01no057_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:55 2005
         (195 letters)



>mm_chr12_41344003_41344598
          Length = 596

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/193 (95%), Gaps = 5/193 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctcttagataccca---gaccccttctttgtgtcaccagggacaaagaaattc 62
           ||||||||||| ||| ||  |   ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctctgagagac--atgagaccccttctttgtgtcaccagggacaaagaaattc 263

                                                                       
Query: 63  cattctttttattcctgctccatattctagtcatctcagatggtcagcttgtaacaggca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 cattctttttattcctgctccatattctagtcatctcagatggtcagcttgcaacaggca 323

                                                                       
Query: 123 aggaccagccagtatttatgtggctcgaagtggattgtggcaagtggaattcttgtaaac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggaccagccagtatttatgtggctcgaagtggattgtggcaagtggaattcttgtaaac 383

                        
Query: 183 cctactttgaccg 195
           |||||||||||||
Sbjct: 384 cctactttgaccg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 596
Length adjustment: 8
Effective length of query: 187
Effective length of database: 588
Effective search space:   109956
Effective search space used:   109956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)