Query= MSMg01no057_j07.b1 MSMg01no057_j07.b1 CHROMAT_FILE:
MSMg01no057_j07.b1 PHD_FILE: MSMg01no057_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:34 2005
(621 letters)
>mm_chr12_16026844_16027864
Length = 1021
Score = 1110 bits (574), Expect = 0.0
Identities = 607/618 (98%), Gaps = 3/618 (0%)
Strand = Plus / Plus
Query: 5 gaattccatatataccgtgctcctgtgtatcgagaatgctacaactaattttcctcaact 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatatactgtgctcctgtgtatcgagaatgctacaactaattttcctcaact 264
Query: 65 gcattttctattatcctctgtctccacatgacctcatcttcactctagtcacctctattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcattttctattatcctctgtctccacatgacctcatcttcactctagtcacctctattc 324
Query: 125 cagaaggcaaggccttctcagtagcaatttcatgcttttaggatggctatcacatgcaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaaggcaaggccttctcagtagcaatttcatgcttttaggatggctatcacatgcaaa 384
Query: 185 agccacatgctcacttgcacaccctgcaaaggccaaggtcctataacaatcactggagcc 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 agccacatgctcacttgtacaccctgcaaaggccaaggtcctataacaatcactggaacc 444
Query: 245 ttcaaaaggcctcgagagtcactctgaccagaacactggggtcagct-cctgctctagct 303
|||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 445 ttcaaaaggcctcgagggtcactctgaccagaacactggggtcag-tacctgctctagct 503
Query: 304 tttgttttgtgactataccaggcatttaacctatggcctcacatatgctagcaggcattc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttgttttgtgactataccaggcatttaacctatggcctcacatatgctagcaggcattc 563
Query: 364 tagcacgcagttgcatcccctgttcaagttctgagctgtttgctgttattcttaattcta 423
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagcggg-agttgcatcccctgttcaagttctgagctgtttgctgttattcttaattcta 622
Query: 424 ccctatattctctgtcattgcccattcacttggcaaatgtgtgtggagcctttcctgtca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccctatattctctgtcattgcccattcacttggcaaatgtgtgtggagcctttcctgtca 682
Query: 484 tgcactattaatatgtaataggaatcttattgaatgaggtaaaaatagattttacatatg 543
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 683 tgcactattaatatgtaataggaatcttattgaatgaggtaaaaatagactttacatatg 742
Query: 544 ccctactctgtataatataaataaacaggttaagaagatgaagacataattagatatacc 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccctactctgtataatataaataaacaggttaagaagatgaagacataattagatataca 802
Query: 604 gaaaaataatgcctatca 621
||||||||||||||||||
Sbjct: 803 gaaaaataatgcctatca 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_j07.g1 MSMg01no057_j07.g1 CHROMAT_FILE:
MSMg01no057_j07.g1 PHD_FILE: MSMg01no057_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:34 2005
(579 letters)
>mm_chr12_16157090_16158068
Length = 979
Score = 1089 bits (563), Expect = 0.0
Identities = 572/575 (99%)
Strand = Plus / Minus
Query: 5 gaattcttgttatctccctggatgatttttgtctttttttatgggatggctaaagattca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattcttgttatctccctggatgatttttgtctttttttatgggatggctaaagattca 720
Query: 65 gaattaatacatgctagctcagtgctgtttctgaaccaatgggtctataggcatgagcta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaattaatacatgctagctcagtgctgtttctgaaccaatgggtctataggcatgagcta 660
Query: 125 tttttttaaaatcaaattgtaagtttcatgtttattttaatgcaggcagtggtgcatttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tttttttaaaatcaaattgtaagtttcatgtttattttaatgcaggcagtggtgcatttt 600
Query: 185 actttatatgtctttaacacaaaagaatagggttgtttttttcccaaaatttctaataaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 actttatatgtctttaacacaaaagaatagggttgtttttttcccaaaatttctaataaa 540
Query: 245 actgacccttccaggtaaggggttatgcttttgtttggctttgcctaagctctggtaccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 actgacccttccaggtaaggggttatgcttttgtttggctttgcctaagctctggtaccc 480
Query: 305 tgatggaaagctttgccatgctgaggaggaacaactacgtttgccaggagatcctcccaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgatggaaagctttgccatgctgaggaggaacaactacgtttgccaggagatcctcccaa 420
Query: 365 agaacatgtgctattccttgtctgggcaatggagcgaaacccagtccccgcagttggatc 424
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 419 agaacatgtgctattccttgtctgggcaatggagtgaaacccagtccccgcagttggatc 360
Query: 425 actgtggcagggagggattgcctaattccttcctcattgcttctgatctagggaatattc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 actgtggcagggagggattgcctaattccttcctcattgcttctgatctagggaatattc 300
Query: 485 acagtagtcaccccccaagtctattggaaaatattcagagcaatcacctcccccccccca 544
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 299 acagtagtcaccccccaagtccattggaaaatattcagagtaatcacctcccccccccca 240
Query: 545 gctccatctcatgtttccctttctgcatcttcagc 579
|||||||||||||||||||||||||||||||||||
Sbjct: 239 gctccatctcatgtttccctttctgcatcttcagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
