BAC Information

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BAC

Clone NameMSMg01-057M10
Chromosome12 (Build37)
Map Location 58,692,354 - 58,692,694
singlet/doubletsinglet
Overlap gene4921506M07Rik
Upstream geneNkx2-9, Pax9, Slc25a21, AU021838, LOC100040044, Foxa1
Downstream geneEG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057M10.T7 (MSMg01no057_m10.b1)MSMg01-057M10.TJ (MSMg01no057_m10.g1)
ACCAG284850AG284851
length675678
length of high quality
(start - end)
372 (23 - 394)341 (56 - 396)
definitionCHROMAT_FILE: MSMg01no057_m10.b1 PHD_FILE: MSMg01no057_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:50 2005CHROMAT_FILE: MSMg01no057_m10.g1 PHD_FILE: MSMg01no057_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTCCTATATCCAGAGAATGCGCGGAATTCTTTGTTTATCCCTGAGCCC
CATTTTTTAATGGGGTTATTTGATTTTCTGGACTCCACCTAACTGAGTTC
TTTATATATATTGGATATAAGTCCCCTATCTGATTTAGGATAGGAAAAGA
TCGTTTCCCAATCTGTTGGTGACCTTTTTGTCTTATTTATGGTGTCTTTT
GCCTTACAGAGGCTTTGCAGTTTTATGAGGTCCCATTTGTGAATTCTCCA
TCTTACAGCACAAGCTATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGC
CAATATCTTCGAGGCTTTTGCCCACTTTCTCCTCTATAAGTTTCAGTGTC
TCTGGTTTTGTTTGGAGTTCCTTGATCCATTTAGATTTGACCTTACCTCA
AGGAGATAGGAATGGATCAATTCACATTCTTCTACATGATAAGCATCAGT
TGTGCCATCACCATTTGTTGAAAATGCTGTCTTTTTTCCCACTGGATGGT
TTTAGCTCCCTTGTCAAAGTTCAAGTGACCTTAGGTGTGTGGGTTCATTT
TCTGGGTCTTCAATTCTATTCCATCTGTCTACCTGTCTGTTGCTATTCCA
GTACCATGCAGTTTTTATCCCAATTGCTCCGTAATAAAGCTTTTAGGCCA
GGCTTTGTGATTCCACCAGAGGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTGTTTCCTCTCTCTCTTTAATAATTTCTGTTTCCTCCTTCCC
ATTATGCTGCAGCTGTGTGCTTTGCAGTCGATTTTTCAGTATGCCTGCAA
GTAGCTCCTCTCCCACAGCGTCTCCTCCTAATATCTTATTTCTGTTCTGC
CTCAGGCTTAGAAGCTGGATAAATAAACCTGGCAATATTATTTGTAAAGT
GAGGGTGACTAGCCTCAGCGGCAGGGCCTTGGAAGCTTTCCTGTGGGAAA
GCGCCTGCTCCCCTCCAACCTCAGGCCTCGGCTGACATCCCTTCAGGACT
CTTTGCTTACGACCTGCTTCCCAAACTTCCTGCCAGACCCCAAGATGGCA
ACATACCTGCACAGTGAATGCGTAAGGGATAACTACCTTTGCCATTTTCT
GTTCTTCTTGGCTCAGATGCTGTGAAAATATTTTTGTATTTGAATCAGGC
ATATTTAGGGCATATAGCTGTAGACCAGTTCTTTTTGCAAATCAAAATGA
AGAATAACCGCTCTCAAAACCCCAGAAAACCTTTATGCCATTTGAATATT
TTAAAATGCAAACTCTAATGCTGACCTTGTGGGATTTTTGAACACAGCTG
TCCTTTTATACAAAGATCCTAATTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_m10.g1 MSMg01no057_m10.g1 CHROMAT_FILE:
MSMg01no057_m10.g1 PHD_FILE: MSMg01no057_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:50 2005
         (341 letters)



>mm_chr12_58692154_58692894
          Length = 741

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgtttcctctctctctttaataatttctgtttcctccttcccattatgctgcagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgtttcctctctctctttaataatttctgtttcctccttcccattatgctgcagctg 260

                                                                       
Query: 61  tgtgctttgcagtcgatttttcagtatgcctgcaagtagctcctctcccacagcgtctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgctttgcagtcgatttttcagtatgcctgcaagtagctcctctcccacagcgtctcc 320

                                                                       
Query: 121 tcctaatatcttatttctgttctgcctcaggcttagaagctggataaataaacctggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctaatatcttatttctgttctgcctcaggcttagaagctggataaataaacctggcaa 380

                                                                       
Query: 181 tattatttgtaaagtgagggtgactagcctcagcggcagggccttggaagctttcctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattatttgtaaagtgagggtgactagcctcagcggcagggccttggaagctttcctgtg 440

                                                                       
Query: 241 ggaaagcgcctgctcccctccaacctcaggcctcggctgacatcccttcaggactctttg 300
           |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ggaaagtgccagctcccctccaacctcaggcctctgctgacatcccttcaggactctttg 500

                                                    
Query: 301 cttacgacctgcttcccaaacttcctgccagaccccaagat 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttacgacctgcttcccaaacttcctgccagaccccaagat 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)