BAC Information

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BAC

Clone NameMSMg01-058L19
Chromosome12 (Build37)
Map Location 69,868,797 - 69,869,094
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058L19.T7 (MSMg01no058_l19.b1)MSMg01-058L19.TJ (MSMg01no058_l19.g1)
ACCAG285580AG285581
length709706
length of high quality
(start - end)
299 (69 - 367)637 (70 - 706)
definitionCHROMAT_FILE: MSMg01no058_l19.b1 PHD_FILE: MSMg01no058_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:04 2005CHROMAT_FILE: MSMg01no058_l19.g1 PHD_FILE: MSMg01no058_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTTCTCCTATTTACTGAAAGCCAGTCAAACAGAATAATCAAAC
ACTCTCGATCCTCTGCCACCCATGCTTTAGTGACCTTACACGAAGCGTTG
TTTCCACTCCCCAATTTCCTCTCCTGGAAAATGTCTCCATCATTATCTGT
GTTTCAAACTTACTGCTATTTAAAAGAAGCCGTTCACCCTGCCCCATCCA
CTTGTGCTATTGATCCCAACTTTTTCTGCCTTTCTCTGGAACTCGTGCCA
TCAATAATTCTCTTTCTGTCTGTCAAATTTTCAGGCTTTTGATTCGCTGG
CTGCTTATTTTTTTATCCCCCCACCACTGTGCCCAGGACCCTCTACTCCA
AGAATACCTTGTCTTGATTCTGAGATAAAATTATAAGTACCTATTTCTTA
TGTTCTATTCATTATTAAGCACCCAAAAGTTTAACTGGACTGTTTTTATC
TTTTTTTAAATTATTATGCTACCACAGTTTCAAGTGGAAAATCAAAACAG
TATGCAGTGAGATGGAATACATTATAATTTAGAATGTTCTAGAAAATCTA
GGAATCTGATGACACACTACCTTCCTATCTATGGAGCTTACCCATAATTT
TATTAAAAAATATTCCCATCTAGGCACCAATAACTTTCTGGTTTTGACTG
CAAAATACT
ATTACXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAACAAGTGAGGTGACA
CTATAGATTTACACGCGGAATTCCAAGAGGATAATAAGAATGCTTGAATG
AAGAATTGAGTTGGAATTTTGATGGGGATTGCATTAAAACCATTCTCAAC
AATAAAAGAAGAATGCGAATTGATCCATTCTTGTATTCTTGTACAAAGCT
CAAGTCTAAGTGGATCAAGGAACGACACAACCAGAGACACTGCCCCATCT
GGGGATCCATCCCGTAAACAACCACCGAACCAGACACTATTGCAGATGCC
AACAAGAGCTTGCTGACTGTATACTGGAATAGCTGTCTCCTGAGAGGCTC
TACCATTGCCTGACTAATACAGAAGTGGAATCTCACAGCCATCCATTAGA
GAGGGAGCACAAGGTCTCCAATGAAGGAGCTAGAGAAAATACCCAAAGAG
CTGAAGGGGTTTGCAGCCTACTAGAAGGAACAACAATATGAACTAACCAG
TAACCCCAGAGCTCCCTGGGACTAAACCACCAATTAAAGAAAGTACACGG
AGTACTTTCATGGCTCTAGGTGCATATGTAGCTGAGGATGGCCTAGTTGG
TCATCATTGGGGGGAGAGGCACTTGATCCTGTGAAGGTTCTATGCCCAAG
TATAGGGGAATGCCTGGGCCAGGAAGTGGGGTTGGTTGGTTTGGGGAGCA
GGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_l19.b1 MSMg01no058_l19.b1 CHROMAT_FILE:
MSMg01no058_l19.b1 PHD_FILE: MSMg01no058_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:04 2005
         (299 letters)



>mm_chr12_69868597_69869295
          Length = 699

 Score =  545 bits (282), Expect = e-160
 Identities = 294/298 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgaaagccagtcaaacagaataatcaaacactctcgatcctctgccacccatgcttt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||
Sbjct: 498 tactgaaagccagtcaaacagaataatcaaagactctcgatcctctgccatgcatgcttt 439

                                                                       
Query: 61  agtgaccttacacgaagcgttgtttccactccccaatttcctctcctggaaaatgtctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agtgaccttacacgaagcgttgtttccactccccaatttcctctcctggaaaatgtctcc 379

                                                                       
Query: 121 atcattatctgtgtttcaaacttactgctatttaaaagaagccgttcaccctgccccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atcattatctgtgtttcaaacttactgctatttaaaagaagccgttcaccctgccccatc 319

                                                                       
Query: 181 cacttgtgctattgatcccaactttttctgcctttctctggaactcgtgccatcaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacttgtgctattgatcccaactttttctgcctttctctggaactcgtgccatcaataat 259

                                                                     
Query: 241 tctctttctgtctgtcaaattttcaggcttttgattcgctggctgcttatttttttat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 258 tctctttctgtctgtcaaattttcaggcttttgattcgctggctgcttacttttttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)