BAC Information

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BAC

Clone NameMSMg01-059C19
Chromosome12 (Build37)
Map Location 7,389,998 - 7,390,221
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042118
Downstream geneLOC668380, EG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059C19.T7 (MSMg01no059_c19.b1)MSMg01-059C19.TJ (MSMg01no059_c19.g1)
ACCAG285915AG285916
length721718
length of high quality
(start - end)
231 (51 - 281)551 (78 - 628)
definitionCHROMAT_FILE: MSMg01no059_c19.b1 PHD_FILE: MSMg01no059_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:37 2005CHROMAT_FILE: MSMg01no059_c19.g1 PHD_FILE: MSMg01no059_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTCATTGTCCCATTTCTGACTCCTAATCCCTAGGATTAAAG
GTGTGAACCACCACAGTGGCTGGCCATTCTCATGAATTTTAATGTAATGG
ATTCTTTTATGGTTGCTATTTAGGCATAAATAGAATTAAAAGTACAAGTC
TTCCTTAGGAGTTTGTTGTTTGACAGACCCAATTCTGTCTCTTTCTATTT
AATATGGACAGCTACGAATCCTGAGTTACCACTGCCCTACAGAAAGAGTG
GTAGTCCTAACAACTGAGAAAGTGTTAATGAATAGAAGCCCATTAGAAGT
GATGGAACAAGATCTGGGAGCAGAACTAGATACACTTCACATGATATGTG
AGTGATTAGATTGCTTCTTCCTCACAGCTAAGCATCCTTACTTATCACTA
CATGTTTTCTTTCTATTTAAAATTGATCCATAGGCAGATTCAAAACATGT
ATACACAAAGACAGAGCTAACTGAGTTATAAGAATAAAAACATCACCAGT
TAACAGAAGAAGCTCATTATTACCCACAAAACTATCAGTAAAAGATCCAG
GGGAGAAAATAACAATTTTTAGTTTTAAGCCATTAAGCTCAAAAGTTCAT
AAGGACAAAAAAATCACAGAAATTTCCCATAAAAACCATTAAGATAAGAA
CCAAACCGAAAAGTACTTAAG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATT
TTTAAATGGAGTTATTTGAATTTCTGGAGTTCAGCTTCTTGACCTCTTTG
TATATATTGGACATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATTCT
TTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTATCTTTTGCCC
TACAAAAGCTTTGGAATTTTATGAGTTCCCATTTGTCAATTCTTGATCTT
ACCTCACAGGCCATTGCTGTTCTGTTTAGGAATTTTTCCCCTGTGCCCAT
ATCTTCGAGGGGTTTATTCACTTTCTTCTCTATAAATTTCAGTGTCTCTG
GTTTTATGTGGAATTCTTTGACCTACTTAGACTTGAACTTTGTACAAGGA
GATAAGAATGGATCAATACTCATTCTTCTACATGCTAACTGCCAGTTGTG
CCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAG
CTCCCTTGCCAAAGATCGAGAGACCATAGGTGTGTGGGTTCATTTCTGGG
TCTTCAATTCTATTCCATTGATCTAGTTGTCTGTTGTTGTACCACTACCA
TGCATACACAGGGTATCACCATGCAGTTTTTATCACAATTTCTCTGTAGT
ACAGATTGAAGTCAGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_c19.b1 MSMg01no059_c19.b1 CHROMAT_FILE:
MSMg01no059_c19.b1 PHD_FILE: MSMg01no059_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:37 2005
         (231 letters)



>mm_chr12_7389791_7390421
          Length = 631

 Score =  402 bits (208), Expect = e-117
 Identities = 220/224 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   tcctcattgtcccatttctgactcctaatccctaggattaaaggtgtgaaccaccacagt 67
           |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 431 tcctcattgtcctatttctgactcctagtcccttggattaaaggtgtgaaccaccacagt 372

                                                                       
Query: 68  ggctggccattctcatgaattttaatgtaatggattcttttatggttgctatttaggcat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggctggccattctcatgaattttaatgtaatggattcttttatggttgctatttaggcat 312

                                                                       
Query: 128 aaatagaattaaaagtacaagtcttccttaggagtttgttgtttgacagacccaattctg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaatagaattaaaagtacaagtcttccttaggagtttgttgtttgacagacccaattctg 252

                                                       
Query: 188 tctctttctatttaatatggacagctacgaatcctgagttacca 231
           |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 251 tctctttctatttaatatggacagctacaaatcctgagttacca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)