BAC Information

Click to search

BAC

Clone NameMSMg01-059D02
Chromosome12 (Build37)
Map Location 61,822,202 - 61,822,610
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059D02.T7 (MSMg01no059_d02.b1)MSMg01-059D02.TJ (MSMg01no059_d02.g1)
ACCAG285929AG285930
length897688
length of high quality
(start - end)
---407 (73 - 479)
definitionCHROMAT_FILE: MSMg01no059_d02.b1 PHD_FILE: MSMg01no059_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:38 2005CHROMAT_FILE: MSMg01no059_d02.g1 PHD_FILE: MSMg01no059_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTNTTTTTTTTTTNCCCNTTCTTCCCTTTTTCTTCTCCNCTCCCTNTC
CTTTTTTNNCTCCCCCTCCCTTTCCCCACTNAATCTTTTCTTCTTATTTT
CCCCTTTTCATCTTTTCCCTTTTCCCCCTTTCCCCTTATCACTTTATATC
TTCACCTTTCCCCTATTTTATACTANCCTCCTCTCCCCCTAATCACCCTA
TATTNTACTTTATTNNACCCCACCTAACCTCCCATAATAACCCCCAACTC
CCTTATAAGATCGTTAAAGATGACAAAATAAACATAATTATATAGTGTAA
TATACAAATCATGGTAGATAGTGACCACTTTTCTCCTAAAAAAAATAAAA
AAAAAAAAAAATTTTTTGTGTGGGTCCGCGGGGGGCGNCACCCCCGGGCG
GGCCCCCCTTAAAAAAAAATATAAAGGGCGGGGAAGATACGTGTTTCCCC
CCAGAGACCCCGTTAAATTTTTATATTTTCTGCTTGCCCACAAAAAAGAA
AAAAAGAAGAGAGGGGTGGGGTTAAAAAATTTCCCCCTCGGGGCCCCGGT
CGGGATTTTATAAAAAGAAAAATATTTTTTCCTCAAATTTTTTCTCCACC
TCCCACTCCCATTTTTTTTCTCTTTTCGCCCCGCGCCCCCCTTTTTCTCC
TTTTTTTTATTAAAAGACCACTATAAGAAACCCCCCCAAGGGGGGGTTGT
TTTTCCCTCCCTTTTTTAAAAAAAACACCCCCGTCCCCTTTTTTCGTTCC
CCCCCGACTTTATAAAAAAATAAATGTTGTTTTTTTTTTCTCTCCCCNCC
TTTNTTTTTTAATAAAACTCCCCACAATTTTGTAAAAAAAATAANAAGGA
CCCGTGTTTTTCTCCCCACAGGTAACCATCGTGGTGTGTTTGTAGGG
NTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTCACCTGCGCACAAGGCTTGTTTA
CTAGTTAGGCACAGCGGAGGCCCGTGCCATCTTATAATGGCGATTGCTCG
CGGCACACACGGCTCTCCTTAGAGATTACTGGCGGCATGCACGCGATTGC
TCGCAGCACATACCAGCTCTCCACAATTTAGTATTGAATGAGGCTGGACT
TTCTGGTCAAAGATGATGCCTCACATCTCTGACAGGCATAGAGGAAGGGC
GATGTGACACTATGGGGCCTCCCCTATAAGGCATTCATAACACTTAGGAT
GAACCCGCAGTCTGGATTTAACTCTATAAGGCTTTACCTCCTACTAAAAT
TATTTTACAGGATTATAATGTCAATATTTAGAGAGTAGGGCTTACTTATT
TATATTTTAACACTTATAAATTTAATATTTACAATATGAATTTACATGAA
ATTGAATGTAGATTAAAATGCTTTAATCCCTTCAGATATATATATATATA
TATCTGTATATATATATTCCTATAACAAAATTTAAGCCTATATATATATA
TATGTATCACATGAACAGTACAAGAATGTGTCTTCTATAAAACTTATGGC
CACCACTCCCAATAAATAACACCTTCCTGAAATTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_d02.g1 MSMg01no059_d02.g1 CHROMAT_FILE:
MSMg01no059_d02.g1 PHD_FILE: MSMg01no059_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:38 2005
         (407 letters)



>mm_chr12_61821849_61822655
          Length = 807

 Score =  663 bits (343), Expect = 0.0
 Identities = 392/409 (95%), Gaps = 2/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actct--cacctgcgcacaaggcttgtttactagttaggcacagcggaggcccgtgccat 58
           |||||  ||||||||  ||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 762 actctcgcacctgcgtgcaaggcttgtttactagttaggcacagcggaggcccacgccat 703

                                                                       
Query: 59  cttataatggcgattgctcgcggcacacacggctctccttagagattactggcggcatgc 118
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 702 cttataatggcgattgctagcggcacacacggctctcctcagagattactggcagcatgc 643

                                                                       
Query: 119 acgcgattgctcgcagcacataccagctctccacaatttagtattgaatgaggctggact 178
           | |   ||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 642 atgtttttgctcgcagcacgtaccggctctccacaatttagtattgaatgaggctggact 583

                                                                       
Query: 179 ttctggtcaaagatgatgcctcacatctctgacaggcatagaggaagggcgatgtgacac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttctggtcaaagatgatgcctcacatctctgacaggcatagaggaagggcgatgtgacac 523

                                                                       
Query: 239 tatggggcctcccctataaggcattcataacacttaggatgaacccgcagtctggattta 298
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 522 tatggggcctcccctataaggcattcataacagttaggatgaacccgcagtctggattta 463

                                                                       
Query: 299 actctataaggctttacctcctactaaaattattttacaggattataatgtcaatattta 358
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 actctataaggcttcacctcctactaaaattattttacaggattataatgtcaatattta 403

                                                            
Query: 359 gagagtagggcttacttatttatattttaacacttataaatttaatatt 407
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gagagtagggcttacttatttatattttaacacttataaatttaatatt 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)