Query= MSMg01no059_e01.b1 MSMg01no059_e01.b1 CHROMAT_FILE:
MSMg01no059_e01.b1 PHD_FILE: MSMg01no059_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:43 2005
(620 letters)
>mm_chr12_39357159_39358180
Length = 1022
Score = 1158 bits (599), Expect = 0.0
Identities = 612/618 (99%), Gaps = 4/618 (0%)
Strand = Plus / Plus
Query: 5 ggaattcacagtttttgttattgcaatgatgtaaaatttggctattagaaaatttgttgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcacagtttttgttattgcaatgatgtaaaatttggctattagaaaatttgttgt 264
Query: 65 ctctgtttttataggcctatttgcatgaaaaagtagaagtttatataatgtgatactgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctgtttttataggcctatttgcatgaaaaagtagaagtttatataatgtgatactgca 324
Query: 125 tattttagttgcatgcactcccatagggtttctgtttcccaaatgcatcttatgccattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattttagttgcatgcactcccatagggtttctgtttcccaaatgcatcttatgccattt 384
Query: 185 ccacttactggctgtgagaaagaaaaaaaaaaaactgcaaaagatcaaagaaatatgatg 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 ccacttactggctgtgagaaagaaaaaaaaaaa-ctgcaaaagatcaaagaaatatgatg 443
Query: 245 ggaaaggatgccttgtatagttgctgtcattggcaagcagtcataagtatggctgcaaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaaaggatgccttgtatagttgctgtcattggcaagcagtcataagtatggctgcaaca 503
Query: 305 atcccaagtgcaaactgccatcctttgcctattagagtcactgcatccctggtgttcgac 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 atcccaagtgcaaactgccatcctttgcttattagagtcactgcatccctggtgttcgac 563
Query: 365 ccgtggcttaagaaaaaggtaaattcaaagattttattaaagcattgtcaat---aacat 421
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 ccgtggcttaagaaaaaggtaaattcaaagattttattaaagcattgtcaatgataacat 623
Query: 422 gttctatctaaatactgtttttcagtaactttactcttcccagaagacactaaaagatca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttctatctaaatactgtttttcagtaactttactcttcccagaagacactaaaagatca 683
Query: 482 ggcataagatttttcttgagttanaacactagaaaatgattttcagtttgcttagttttg 541
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggcataagatttttcttgagttaaaacactagaaaatgattttcagtttgcttagttttg 743
Query: 542 ttttaattccaaaaacatgagagaaaatgtattactagaagtaattgtgattatatagca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttaattccaaaaacatgagagaaaatgtattactagaagtaattgtgattatatagca 803
Query: 602 agctttattcatttctac 619
||||||||||||||||||
Sbjct: 804 agctttattcatttctac 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space: 617320
Effective search space used: 617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_e01.g1 MSMg01no059_e01.g1 CHROMAT_FILE:
MSMg01no059_e01.g1 PHD_FILE: MSMg01no059_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:43 2005
(607 letters)
>mm_chr12_39499105_39500111
Length = 1007
Score = 1145 bits (592), Expect = 0.0
Identities = 604/610 (99%), Gaps = 4/610 (0%)
Strand = Plus / Minus
Query: 1 ccttttatatttaaaatgttccttttgtcctgagtttcttctcaagcttaaaaatagccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ccttttatatttaaaatgttccttttgtcctgagtttcttctcaagcttaaaaatagccg 596
Query: 61 tttgactacaggcatttcatgtgagcacatcaaagaaagctacaaatcttccttgtatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttgactacaggcatttcatgtgagcacatcaaagaaagctacaaatcttccttgtatct 536
Query: 121 gtgtgacacactctaaataaaactcagggtcttgttctctttgctatgatgatatcaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtgtgacacactctaaataaaactcagggtcttgttctctttgctatgatgatatcaaat 476
Query: 181 atcagtgttcattggtttatcatatataattgggagcaacatcttttacctagaaaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atcagtgttcattggtttatcatatataattgggagcaacatcttttacctagaaaaggg 416
Query: 241 ttgtttatgaatggattcttatctttcctagggaaaatttacgtgtgacacttgtgacac 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 415 ttgtttatgaatggattcttatctttcctagggaaaatttatgtgtgacacttgtgacac 356
Query: 301 cttttgcactaataaaggaaggcaatattatcacaaaggtcttcaagcaagaatctcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cttttgcactaataaaggaaggcaatattatcacaaaggtcttcaagcaagaatctcatt 296
Query: 361 gcttcaggtatttgcatttcaagttaaaacataggtattttttctgagcatgcatgcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gcttcaggtatttgcatttcaagttaaaacataggtattttttctgagcatgcatgcagc 236
Query: 421 atcaatccatttttattgacatctagtcagatctatctccttctccctcctcttccttgt 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 235 atcaatccatttttattgacatctagtcatatctatctccttctccctcctcttccttgt 176
Query: 481 ctccctgtccccctatccctcctccaatcctgtctctgtctt----tctcactatctttc 536
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 175 ctccctgtccccctatccctcctccaatcctgtctctgtctttctctctcactatctttc 116
Query: 537 ttttattcattttattttgtgaaaaggactttcatgatttagcccaaacttatactgaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ttttattcattttattttgtgaaaaggactttcatgatttagcccaaacttatactgaaa 56
Query: 597 tctttatgta 606
||||||||||
Sbjct: 55 tctttatgta 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
