BAC Information

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BAC

Clone NameMSMg01-059G10
Chromosome12 (Build37)
Map Location 118,292,350 - 118,292,691
singlet/doubletsinglet
Overlap genePtprn2
Upstream geneZfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059G10.T7 (MSMg01no059_g10.b1)MSMg01-059G10.TJ (MSMg01no059_g10.g1)
ACCAG286088AG286089
length731727
length of high quality
(start - end)
275 (47 - 321)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no059_g10.b1 PHD_FILE: MSMg01no059_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:54 2005CHROMAT_FILE: MSMg01no059_g10.g1 PHD_FILE: MSMg01no059_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATGCGCGG
AATTCTCAGATTCTGACATCACAGTAGGTTTAGAGAAAGAAAAAAAGTTC
TAATATACTACCCCTAAGTTCTTACATTTAAACCCATGGATATACCAATC
TCTCAGCCCTTATCAGAAAGGTATCTTTTGCATTAGATGGCAACTAAGAC
AGACACCCAACAGTATAGTCAATGAAGAATGAGACTGGAAAGTGCTAAGC
TTTACATAGGAAATCTATATGACCAAGGCTTGGGAATCATCATGGAAGAA
GTGGAAAGATTGTAGGAGTCATATTTAGTGGACACCTGCAGAGAAATGGT
ATTTGCCAGGTACGACATGGCCCATTGCACACAGGAACACACAGCAGAGA
GCTGGCCAAGAGCAAACCACCCTCGTTCCCAGCACGGATAGAGGAGGCGC
TCATGGAGCCCCACCCTGAGCTGAGGGGAGTTAGCAATCGATGCAGGAAG
CACCAGAGGACTCAGCGGGGTTCCAGACAAAGCATGTGACGTGTGGAAGG
ATAAGTGGTAGGGATATAGGTTCAACCTGTCTTCTTTCCCCTCATCTTTT
ATTTCTCTCCCTTTTCTTCCTCGTGCCCCTTCCATTTTTCCTCCCCCTTT
TATTTCTCTCTTTTGTTTATCCTCTCCCTTCCTTTTCCCTTCTTTTTTTC
TTACCTTTTTTTTTTCTCTCGCGTTCTATTN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCCTCGGCGGGGTTGAGAAGGTG
AGAAGCTGCAGCTGTACGGCATAGAGTGAGCGCCCCACATCGCCTGCAAA
GAAAAATCCAAATGTAATCAACAGACGGTCAGGTGGAGGAGACTAATTGG
ATTGCTCTGAAATGACTCCATAAACCGGGAATGTGTGGGTGGAGGCAGGG
TTTACCCATGTGATTCAGCGGTCCCGATTCACAGCGGCACACACAAAGGG
GCTGCGAAAATGCTGTTTATAATATTGTGTATGGGTTGGAGACCCGCAGG
TTGATTTAAAATGTATGTATAGTTCCAGGGCTCTGACAGCCAGGCCGCCC
TGGAGGGGGAGCCGCTCCCACCCCTAAGATACTTTTAATTGGATGTGGCT
ATAGAAAGAGAAAGTTCCAATTTCGACGTCGATCCTTGAAGTATTAGCTC
GACCAAGCTTTGCCTTGTGGTGCACTGAGATTGGATTGATGACGAAAGGC
GCGTTTCTATATTCTGTTCCCTGTACTACTATATGCTCTTCTGCGTTTCT
TTTAGGTTTATCTCTTCTCCCTAGTTCAATATTGTCATCTGTCATGTCCT
TTCCCTCCCCTTGTTTTCTATTCTTTACCTTCCTTCCTTCATTCTTTTTT
CCTCATTTGTTACTTTTTTCCTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_g10.g1 MSMg01no059_g10.g1 CHROMAT_FILE:
MSMg01no059_g10.g1 PHD_FILE: MSMg01no059_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:54 2005
         (343 letters)



>mm_chr12_118292150_118292892
          Length = 743

 Score =  661 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcctcggcggggttgagaaggtgagaagctgcagctgtacggcatagagtgagcgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcctcggcggggttgagaaggtgagaagctgcagctgtacggcatagagtgagcgcc 260

                                                                       
Query: 61  ccacatcgcctgcaaagaaaaatccaaatgtaatcaacagacggtcaggtggaggagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacatcgcctgcaaagaaaaatccaaatgtaatcaacagacggtcaggtggaggagact 320

                                                                       
Query: 121 aattggattgctctgaaatgactccataaaccgggaatgtgtgggtggaggcagggttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattggattgctctgaaatgactccataaaccgggaatgtgtgggtggaggcagggttta 380

                                                                       
Query: 181 cccatgtgattcagcggtcccgattcacagcggcacacacaaaggggctgcgaaaatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatgtgattcagcggtcccgattcacagcggcacacacaaaggggctgcgaaaatgct 440

                                                                       
Query: 241 gtttataatattgtgtatgggttggagacccgcaggttgatttaaaatgtatgtatagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttataatattgtgtatgggttggagacccgcaggttgatttaaaatgtatgtatagtt 500

                                                     
Query: 301 ccagggctctgacagccaggccgccctggagggggagccgct 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagggctctgacagccaggccgccctggagggggagccgct 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)