BAC Information

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BAC

Clone NameMSMg01-059I05
Chromosome12 (Build37)
Map Location 14,766,748 - 14,767,086
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633789, LOC668481, AW125753, LOC100043256
Downstream geneMap1lc3-ps7, LOC668492, LOC100042426, LOC217409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059I05.T7 (MSMg01no059_i05.b1)MSMg01-059I05.TJ (MSMg01no059_i05.g1)
ACCAG286173AG286174
length719718
length of high quality
(start - end)
624 (49 - 672)536 (80 - 615)
definitionCHROMAT_FILE: MSMg01no059_i05.b1 PHD_FILE: MSMg01no059_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:02 2005CHROMAT_FILE: MSMg01no059_i05.g1 PHD_FILE: MSMg01no059_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATTGCTCTCGGCAGGCAGACCCAGGAGGACTGCTGCATGCT
TTCCACTAGACCCCAGGTGGGCATCTGGCTGTGTGAAGCCACTGACACCA
CTTGGCTGGTGGTTGACAAGGGCCAGTTCTAGGCAACAGGTTCCCAGTCT
CTGGCATCCCACACTGGATACCATGGAGGAGCTGAGAACAAAGTGGGGGC
CCGGGCCAGCTCATTAGTCCCGGGGACAAAGGGAGGAGAGACCAGGGGGA
GAGGTGGCACTGGATGACTCCCATGCAGGCAAGAATCTTTGGTCAGGTCC
TTGGCTGGAGCACAGGATGACCTTCTGGTGGGAGATTAGGCTCGTTAGGA
GAAAGCCTATCTCATCGTTCAAGCACTGCAGGCCTTGATGATCAGAAGCA
GTCTATGGTTTTAGAGCTTTATTATAGAAGGGCAGAGAGAAGGAGAGAAG
GTAGAAAGAGAGAGGCTGGCCATGGCCACGTGAAGAGAGGGGAGAAAGGA
AAGAGCTTAGAAGGAGTGATAGAGAGTAAGAAAAGTGAGAGCTTAAAGAG
AGCAAGGAGGGACCAAGCAGCCTCTCTTATAGTGGGCTGGACTATCTTGC
TGTTGCCAGGTAACAGTGGGGAGGAGAATACCTGGCTATAGTCAGGTAAC
TGTGGGGGTGGAGTCTAGC
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACTACAGATCTCAAGAAC
AAATCAAAAGCATGGAGAGGACCAAATGATAGAATAGAAAATAGAGCATT
TATAATCATTCTAAAAGTCTTAGAGGAGATGATAGGCAAACCAGTGCCTC
TTCCCTTTTCCCAAAATATAGGGTGCATGCTAAAGCAGGTAAAGGCTTTT
TCCATGTCTAGAATAAAGTGAAAAATAAAAATTAACTCTAAATGTGTTCC
CTCTCTGTTTCTTTTCTGTCTTATTGATGGATTTCATGGTGAGATTCTAT
TAGCTGTTTATTTTATATTCCCCACGATTAGGCTATTGCTAAGTGAACAC
TGGATATTGCCATTTCATCCCAATGACCACGACCCTTTCTGAATCTATGC
ACAGAAATCTATGGTCTGGGGAACCCATGCTCAGTAGGTGTGGGAACAAA
AAGGGGGTAGGGGAAAAGGGGGATGGAGGATAGCCCATGCCCTGCCAGAG
TTCCTCCTATGCTCTGGGCAGGCAGGCCCGGGCATGACACCCTGTAGCTC
CGGGGTTATGGAAGAGAGGGCTTAGGGAGAGAGATTTCCCACACAGGCAA
AAACCTGCTCAGTGTGTCTTTGACTGTATCACAGATAGTCTTTTATCGGG
AGACTAAAACATGCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_i05.g1 MSMg01no059_i05.g1 CHROMAT_FILE:
MSMg01no059_i05.g1 PHD_FILE: MSMg01no059_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:02 2005
         (536 letters)



>mm_chr12_14766356_14767290
          Length = 935

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/340 (98%), Gaps = 1/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 193 aaaataaaaattaactctaaatgtgttccctctctgtttcttttctgtcttattgatgga 252
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 393 aaaa-aaaaattaactctaaatgtgttccctctctgtttcttttttgtcttattgatgga 451

                                                                       
Query: 253 tttcatggtgagattctattagctgtttattttatattccccacgattaggctattgcta 312
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 452 tttcatggtgagattctattagctgtttattttatattctccacgattaggctattgcta 511

                                                                       
Query: 313 agtgaacactggatattgccatttcatcccaatgaccacgaccctttctgaatctatgca 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agtgaacactggatattgccatttcatcccaatgaccacgaccctttctgaatctatgca 571

                                                                       
Query: 373 cagaaatctatggtctggggaacccatgctcagtaggtgtgggaacaaaaagggggtagg 432
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cagaaatttatggtctggggaacccatgctcagtaggtgtgggaacaaaaagggggtagg 631

                                                                       
Query: 433 ggaaaagggggatggaggatagcccatgccctgccagagttcctcctatgctctgggcag 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggaaaagggggatggaggatagcccatgccctgccagagttcctcctatgctctgggcag 691

                                                   
Query: 493 gcaggcccgggcatgacaccctgtagctccggggttatgg 532
           ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 692 gcaggcccgggcatgacaccctgtagctccgaggttatgg 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space:   486550
Effective search space used:   486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)