Query= MSMg01no059_k13.b1 MSMg01no059_k13.b1 CHROMAT_FILE:
MSMg01no059_k13.b1 PHD_FILE: MSMg01no059_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:13 2005
(268 letters)
>mm_chr12_74663048_74663715
Length = 668
Score = 484 bits (250), Expect = e-141
Identities = 264/270 (97%), Gaps = 4/270 (1%)
Strand = Plus / Plus
Query: 1 aattctcagctcttttc--gcactaatgcttgcctggatatggctgtgctcccaccttgg 58
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctcagctcct--cctgcactaatgcttgcctggatatggctgtgctcccaccttgg 258
Query: 59 tgataatggattgaatctctgaatctgtaagtcagccccaattaaatgttgtccttataa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgataatggattgaatctctgaatctgtaagtcagccccaattaaatgttgtccttataa 318
Query: 119 gagttgtcttggtcatggtgtctgttcacagcagtaagaccctaatacaccagcctaata 178
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 319 gagttgtcttggtcatggtgtctgttcacagcagtaagaccctaagacaccagcctaata 378
Query: 179 tagacctcaagggacttgagctcaagaaagaaggaaagcctttttagtttcttcaaagct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagacctcaagggacttgagctcaagaaagaaggaaagcctttttagtttcttcaaagct 438
Query: 239 gctcaacagagtgtcaagaactcccttaaa 268
||||||||||||||||||||||||||||||
Sbjct: 439 gctcaacagagtgtcaagaactcccttaaa 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no059_k13.g1 MSMg01no059_k13.g1 CHROMAT_FILE:
MSMg01no059_k13.g1 PHD_FILE: MSMg01no059_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:13 2005
(236 letters)
>mm_chr12_74807379_74808007
Length = 629
Score = 344 bits (178), Expect = 2e-99
Identities = 219/236 (92%), Gaps = 9/236 (3%)
Strand = Plus / Minus
Query: 1 ctgacgctatcagaaggtctgcgatttctcacttatttctaacagtaacatttaaggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgacgctatcagaaggtctgcgatttctcacttatttctaacagtaacatttaaggaga 369
Query: 61 gatatgggctgaaa-agtttagggattttttaacctatgcagaaaacttgataaagtatc 119
|||||| || ||| |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 368 gatatgagc-caaagagtttaggga-tttttaacctatgcagaaagcttgataaagtatc 311
Query: 120 tagtgtttgaaaatagctttttgttttatttttggtaggaacagatggagctcctgaact 179
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 310 tagtgtttgaaaattgctttttgttttatttttggtaggaacagaaggagctcctaaact 251
Query: 180 cccactttatggtttggtggtggagcggggagctctgggacgttgcccttgcttgg 235
||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 250 cccactttatggtttagagg------ggggagctctgggacgttgcccttgcttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 629
Length adjustment: 9
Effective length of query: 227
Effective length of database: 620
Effective search space: 140740
Effective search space used: 140740
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
