BAC Information

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BAC

Clone NameMSMg01-059N23
Chromosome12 (Build37)
Map Location 43,552,042 - 43,552,389
singlet/doubletsinglet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059N23.T7 (MSMg01no059_n23.b1)MSMg01-059N23.TJ (MSMg01no059_n23.g1)
ACCAG286449AG286450
length705703
length of high quality
(start - end)
653 (46 - 698)553 (73 - 625)
definitionCHROMAT_FILE: MSMg01no059_n23.b1 PHD_FILE: MSMg01no059_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:29 2005CHROMAT_FILE: MSMg01no059_n23.g1 PHD_FILE: MSMg01no059_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGA
ATTCTCACCTGAGTACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCATAAATTCAGGTGACAGCAGA
TGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGAGGTTTCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGGATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAG
GATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAA
AATGA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGAGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGTGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGTCATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
AAACATGCTCCACTATGTTCATAGCAGCCTTATTTGTAATAGCCAGAAGC
TAGAAAAAACACAAATGTCCCTCAAGCATACTGTTAAATAACTGACCTAA
AATACCAATTTTATTTAGACCCCAAATTATTATTTGTACCATGACAAAAG
TTGAAAGCACTGTCTGATACTGTTTTTTTTTTTTTTTCACCTTCTGTCCC
TACCAAACATTTTGTGTCTTTTGGAATTAGAATGTGAATATTGACTTTGC
TATAAGCCCTAATATTTAAATTCTTGCAATAGATGAGTAAAACACACTGA
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_n23.g1 MSMg01no059_n23.g1 CHROMAT_FILE:
MSMg01no059_n23.g1 PHD_FILE: MSMg01no059_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:29 2005
         (553 letters)



>mm_chr12_43551439_43552389
          Length = 951

 Score =  569 bits (294), Expect = e-166
 Identities = 336/352 (95%), Gaps = 6/352 (1%)
 Strand = Plus / Minus

                                                                       
Query: 204 gcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggtcatagtact 263
           |||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 951 gcttgtgcaaccactctggaaatcagtctggcagttcctcagaaaattggacatagtact 892

                                                                       
Query: 264 accggaggatccagc--aatacctctcctgggcatatatccagaagatgccccaactggt 321
           ||| ||||||||  |  |||| |||||||||||||||||||||||||||  |||||||||
Sbjct: 891 accagaggatcc--cataatatctctcctgggcatatatccagaagatgttccaactggt 834

                                                                       
Query: 322 aagaaggaaacatgctccactatgttcatagcagccttatttgtaatagccagaagctag 381
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 833 aagaaggaaacatgctccactatgttcatagcagccttatttgtaatagccagaagttag 774

                                                                       
Query: 382 aaaaaacacaaatgtccctcaagcatactgttaaataactgacctaaaataccaatttta 441
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 773 aaaaaacacaaatgtccctcaagcatattgttaaataactgacctaaaataccaatttta 714

                                                                       
Query: 442 tttagaccccaaattattatttgtaccatgacaaaagttgaaagcactgtctgatactgt 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 713 tttagaccccaaattattatttgtaccatgacaaaagttgaaagcactgtctgatactg- 655

                                                               
Query: 502 ttttttttttttttcaccttctgtccctaccaaacattttgtgtcttttgga 553
            |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 654 -ttttttttttttccaccttctgtccctaccaaacattttgtgtcttttgga 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 951
Length adjustment: 10
Effective length of query: 543
Effective length of database: 941
Effective search space:   510963
Effective search space used:   510963
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)