BAC Information

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BAC

Clone NameMSMg01-060A24
Chromosome12 (Build37)
Map Location 111,790,978 - 111,875,962
singlet/doubletdoublet
Overlap genePpp2r5c, 9430024F10Rik, Dync1h1
Upstream geneGtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799
Downstream gene1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060A24.T7 (MSMg01no060_a24.b1)MSMg01-060A24.TJ (MSMg01no060_a24.g1)
ACCAG286595AG286596
length706725
length of high quality
(start - end)
520 (47 - 566)415 (75 - 489)
definitionCHROMAT_FILE: MSMg01no060_a24.b1 PHD_FILE: MSMg01no060_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:43 2005CHROMAT_FILE: MSMg01no060_a24.g1 PHD_FILE: MSMg01no060_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,790,978 - 111,791,493)(111,875,549 - 111,875,962)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTCTTCTCAGTATAATTAATGGATTTGCCTTACCACTGAAGGA
GGAACACAAGATTTTCCTGCTGAAGGTGTTGCTGCCCTTGCACAAAGTGA
AGTCCCTGAGTGTCTACCATCCCCAGGTAAGGCCAGCTGAGCACAGCTGC
CCACCTCTGCAGCGGTCCAGCCATGTCTGAGAGTGCCTCCGTTCCCACAG
CACTGTACTGCATCGAAAACGGGCTTCTGGCAGTATTTCAGAGTCTGGGG
ACAGAGAGTCCTTGTAAGAAAAAACGGTGGGAGATGGCTTAGTTGTATAA
TTGCTTGCCATCAAGTGTGAGGACCACGGTTGAGACCCCAGAACTCATTT
AAATGGCAGAGAGATGTGGCAGCCCACCTGTGCTCCCAACCTCAGACGGT
AGAGGCAGAATCCCAGGAGCAAGCTGGCTAGCCATCTAGCAATGTAGCTA
GCTCCTGGTTCAGGTGAGAGACATTACCTCAGTGGTACAGGCTGGAAAGC
ATCAAGGAAAACCCCAATGTCAGCTTCTCAGCTCCACGGGTATTCATACA
TGTGGACGTTTATGACCACACACATTTATGCACACAAAAAAGAAAATTCA
GGGCAATCTCTGGAATATAGATTGTACAGAAACTTGGGGAGCCAGTTTTG
AAAGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTACTTAGTATTTCCCGGCTGTAGA
TGACATGACTAACTGAAGTCTTGGACTGTGGAACGAGGGACACAGCTAAG
GAGCACAGACAGGTGGGTACTCACATTGGGAGGCAGGCTAAGGCGCTCTC
CATTAGGCAGCGTCAGGAGCTTGTTGTCATCCAGCACGGAGTTCAGGATC
TCCACCCACTCGGGATCCACATCGCCATCAAAGACAATCCACTGGCGTTT
CTGCAGCTCACCTCTCACATTGTCTATGATCCTAGTTTACAAAATAATTT
CACAGGCTTACTCAAGCCAGCTTTGAAATGCCCCCCCTCCGGATGGATCC
TGTTATTTGTGTGAACAGGGTGACTGCATGCGCTTGGATCCTACAGTCCC
GGAAATGCAAACATCAAACAGGGCAAACATACTTTCTCGGCGCGTGTGTG
AAGAGTCCGTCCGTCCACTCCCTGGTGTTGGGATCCCAGGCTCCCTACAG
GTGGTCTTTGCTGATGGCCTTGAACATAATTATGTGGGGCCCGCCCTCCA
AACACATAAAGATGGCTAAAAACCTTGGGGGGAATCGCCAGGCCATGATT
CTTCTCACTTCCTGGGGGGCCAACCAACGTGGGAAACCACAAAAAAACCG
CGACCGATCGTGGTAACAAACCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_a24.b1 MSMg01no060_a24.b1 CHROMAT_FILE:
MSMg01no060_a24.b1 PHD_FILE: MSMg01no060_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:43 2005
         (520 letters)



>mm_chr12_111790774_111791693
          Length = 920

 Score =  982 bits (508), Expect = 0.0
 Identities = 514/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcttctcagtataattaatggatttgccttaccactgaaggaggaacacaag 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcttcacagtataattaatggatttgccttaccactgaaggaggaacacaag 264

                                                                       
Query: 65  attttcctgctgaaggtgttgctgcccttgcacaaagtgaagtccctgagtgtctaccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attttcctgctgaaggtgttgctgcccttgcacaaagtgaagtccctgagtgtctaccat 324

                                                                       
Query: 125 ccccaggtaaggccagctgagcacagctgcccacctctgcagcggtccagccatgtctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccccaggtaaggccagctgagcacagctgcccacctctgcagcggtccagccatgtctga 384

                                                                       
Query: 185 gagtgcctccgttcccacagcactgtactgcatcgaaaacgggcttctggcagtatttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagtgcctccgttcccacagcactgtactgcatcgaaaacgggcttctggcagtatttca 444

                                                                       
Query: 245 gagtctggggacagagagtccttgtaagaaaaaacggtgggagatggcttagttgtataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagtctggggacagagagtccttgtaagaaaaaacggtgggagatggcttagttgtataa 504

                                                                       
Query: 305 ttgcttgccatcaagtgtgaggaccacggttgagaccccagaactcatttaaatggcaga 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcgcttgccatcaagtgtgaggaccacggttgagaccccagaactcatttaaatggcaga 564

                                                                       
Query: 365 gagatgtggcagcccacctgtgctcccaacctcagacggtagaggcagaatcccaggagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagatgtggcagcccacctgtgctcccaacctcagacggtagaggcagaatcccaggagc 624

                                                                       
Query: 425 aagctggctagccatctagcaatgtagctagctcctggttcaggtgagagacattacctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagctggctagccatctagcaatgtagctagctcctggttcaggtgagagacattacctc 684

                                               
Query: 485 agtggtacaggctggaaagcatcaaggaaaacccca 520
           ||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtggtacaggctggaaagcatcaaggaaaacccca 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_a24.g1 MSMg01no060_a24.g1 CHROMAT_FILE:
MSMg01no060_a24.g1 PHD_FILE: MSMg01no060_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:43 2005
         (415 letters)



>mm_chr12_111875349_111876163
          Length = 815

 Score =  723 bits (374), Expect = 0.0
 Identities = 404/414 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacttagtatttcccggctgtagatgacatgactaactgaagtcttggactgtggaac 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 614 tctacttagtatttcccggctgtagatgacatggctaactgaagtcttgaactgtggaac 555

                                                                       
Query: 61  gagggacacagctaaggagcacagacaggtgggtactcacattgggaggcaggctaaggc 120
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 554 gggggacacagctaaggagcacagacgggtgggtactcacattgggaggcaggctaaggc 495

                                                                       
Query: 121 gctctccattaggcagcgtcaggagcttgttgtcatccagcacggagttcaggatctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 494 gctctccattaggcagcgtcaggagcttgttgtcatccagcacggagttcaggttctcca 435

                                                                       
Query: 181 cccactcgggatccacatcgccatcaaagacaatccactggcgtttctgcagctcacctc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cccactcggggtccacatcgccatcaaagacaatccactggcgtttctgcagctcacctc 375

                                                                       
Query: 241 tcacattgtctatgatcctagtttacaaaataatttcacaggcttactcaagccagcttt 300
           |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 374 tcacattgtctatgatcctagtttacaaaaaaatttcaaaggcttactcaagtcagcttt 315

                                                                       
Query: 301 gaaatgccccccctccggatggatcctgttatttgtgtgaacagggtgactgcatgcgct 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314 gaaatgccccccctccggatggatcctgttatttgtgtgaacagagtgactgcatgcgct 255

                                                                 
Query: 361 tggatcctacagtcccggaaatgcaaacatcaaacagggcaaacatactttctc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tggatcctacagtcccggaaatgcaaacatcaaacagggcaaacatactttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)