BAC Information

Click to search

BAC

Clone NameMSMg01-060D08
Chromosome12 (Build37)
Map Location 65,859,747 - 65,860,018
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302, EG623046
Downstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060D08.T7 (MSMg01no060_d08.b1)MSMg01-060D08.TJ (MSMg01no060_d08.g1)
ACCAG286705AG286706
length683747
length of high quality
(start - end)
272 (69 - 340)210 (71 - 280)
definitionCHROMAT_FILE: MSMg01no060_d08.b1 PHD_FILE: MSMg01no060_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:53 2005CHROMAT_FILE: MSMg01no060_d08.g1 PHD_FILE: MSMg01no060_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTCTTTCAGTNNCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCCTATTCCTACAATTGGAATCATATTTT
TTTCTGTAACCTATTTCTTTTCATTGATGGCATTATACGAAAGGATGTGA
AGCCATTAAGACTTGGAGGAAATCTAGGTGGTTGCAAGAGATCTAGCCTT
ATCATTAGGCAAGTGCAAAACCAAAATCAGATTAGATTCCATTCCCTACT
CAGATGCTGCAGGGAAAACAATTCTATAGATTTTTTTTTTAGCACCACAT
TCTGTGCTTCTGTGTCACTGAGAAAATGCTCCTGAATACAGAATTTGCGT
CTTCTAATCTGCAGTCCAAACACCATACGTTAGGCTAAACGCTGTAGAAA
AGTGCAGAAACTATAGTGCTTTTGTATTTCCCAGGGCACACTAGCACACC
ATCACCTCCAAATCTCTGAGAGCTTCAAGTCAATTGAGCATACTTTTAGC
TTGTCCCAAACATCTCCCTTGGGCACCGCCCTGAGTCCTTATCATTGACA
TGTCTGACAGGCGCTGACCGATAGCACCTGCCCTTCCGATCATTGTTGTC
GGTTACCAAAACGCAAGGGAGGCGTCAATAATATCTCGCCTCCCGAACCA
TCCCCCTGCACTACGTCTCTGCTTCTTTGATTT
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCATAAGCCTCGGTAGTATCCTGATGTTG
TTATAAAGACTTATTGGGGGAGCTCTTCCAAAGAGTCTGACTCCTGTAAC
TGGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTCTCTTTCCCTCGCCCTC
TCTTCCCCCCCTCCCCCTTTTTTTTCCCCCCTGCGCCCGCAGCGCTTTCG
TACCCTTGTTAGTTTCCTGCCCTGGCGCGCTGGGGGGCGCCCCCCCTGCG
TCGCGCCCCGGCGGGCCCCCCCTGTTGTGTTTGAACCCTCCCCCGTGCGC
GCGCCCGCCTTTTGGCCTACCCCCCTTCCGCCCCAGCCCGTTCAAAGTCC
ATTCCGCTCGGATCCGGCTCTGGTATCCCCCTTCCCGCTACTCTTCCCAT
CTGTACGCGATGTCGGTCGCGGGCGCGTGCACCGGCGCCGGCCGCAGCCC
CCCCCGCAGTTCTCACTCCGCCGTCCCGCCCGCAATGACTGCGTTCGTCC
CCCCCCCGTTCAGCCCCCCTTTTGTCATCCCCTGCCTCGCCCTCCCCCGT
ATTTTCCGTTCAGTCGGCGCTCCCGCGCCCCCCCGTGTTGGTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_d08.b1 MSMg01no060_d08.b1 CHROMAT_FILE:
MSMg01no060_d08.b1 PHD_FILE: MSMg01no060_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:53 2005
         (272 letters)



>mm_chr12_65859547_65860218
          Length = 672

 Score =  511 bits (264), Expect = e-149
 Identities = 270/272 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcctattcctacaattggaatcatatttttttctgtaacctatttcttttcattgat 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aattcctattcctagaattggaatcatatttttttctgtaacctatttcttttcattgat 413

                                                                       
Query: 61  ggcattatacgaaaggatgtgaagccattaagacttggaggaaatctaggtggttgcaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 412 ggcattatacgaaaggatgtgaagccattaagacttggaggaaatctaggtggttgcagg 353

                                                                       
Query: 121 agatctagccttatcattaggcaagtgcaaaaccaaaatcagattagattccattcccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agatctagccttatcattaggcaagtgcaaaaccaaaatcagattagattccattcccta 293

                                                                       
Query: 181 ctcagatgctgcagggaaaacaattctatagattttttttttagcaccacattctgtgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctcagatgctgcagggaaaacaattctatagattttttttttagcaccacattctgtgct 233

                                           
Query: 241 tctgtgtcactgagaaaatgctcctgaataca 272
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tctgtgtcactgagaaaatgctcctgaataca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)