BAC Information

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BAC

Clone NameMSMg01-060F04
Chromosome12 (Build37)
Map Location 45,203,384 - 45,203,743
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
Downstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060F04.T7 (MSMg01no060_f04.b1)MSMg01-060F04.TJ (MSMg01no060_f04.g1)
ACCAG286793AG286794
length725695
length of high quality
(start - end)
637 (42 - 678)360 (72 - 431)
definitionCHROMAT_FILE: MSMg01no060_f04.b1 PHD_FILE: MSMg01no060_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:02 2005CHROMAT_FILE: MSMg01no060_f04.g1 PHD_FILE: MSMg01no060_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGGATCCGC
GGAATTCCTTCAGTGGAAGTCTCTGAAGTTTATGCTTTCTTCTTTCAAAT
GCATTTTCATTTCAGGAGATGGAGCCTTTGATGGGTGGGGTCTTTTCTCA
GGACAACTTTCTTTTGTCTCAGTACAAGATTCTAGGTTTCTTTATTCTTT
TTTGTTGTTTCCAGACAGGGTTTCTGTCTGGCCTGGCTGTCCTGGAACTC
ACTTTATAGACCAAGCTGACCTCAAACACAGAAATCCGCCTGCCTCTGCC
TCCCAGGTGGTGGTATTAAAGGCGTGTGCCACCACTGCCTGGCTCTAGGC
TTCTTTTCAATGGTGCTAAACCCTGTAACAATTACTTTCAAGCCAACTTC
ACTAGTAATTTTTAAACTTGTTGGTACTCTTCAACCAAAAAAAAAAGGCA
TTTCAAATTGTTTCTGCTCCCATTTTTGCTCTTTCAGTGTATACCTGGAT
GCAAGTAGGCAAGTGGAGGTGACACACACAGTAGATAGCAGCCATGCCAC
AGGTTAGGCACTATATGGAAATTTCCTCTGTCAAACAGATCCATCCATTA
CTTTCAAATTTAACCTTACTCAAATGATCAGACCGTGTGCACAATACAAT
TAAGCTCTTTGTCTGAATATCAATAACAATTCTTGGTCCCATTCCTGATA
GTTGTTGTCCTCTTTAAAGTTTCAG
CTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACTTGGGTCTTCTTGCTTGCACAGTAAG
CCCTCACCCACTTAGCCATATCTCCAGGCCCACCTCAGCAGCTTTCCACA
GAAGACAAAATGGCTTCCAAAAATTTTCTTCAGTAGGGCCCTTCAGCTAC
TAAGTGGGATTGGATTTCTCCAAGCCAATTCCCTTCACCTGGCTATAAAG
TCTCATTCAAGAGCCATGTAGAGGGATAAAGACAGCATCAGGACCTTTGG
CATAGAGAGGGCCCCGTGTTAAACAGATTGTCAGAGCTTTGAGAAAAACT
TTCTTCAGAATTACAGAGGACCATTCTCAGATGGGAGTTTTCTAAGCAAT
CCAACCACCTCTACTTCAAATTTGATATGATGTCATTACGAACTAAGATC
TTTCCATTAAAGTGTCAAGAGTCAGATTTATATACCAGACCTACCAATAA
CAGCTAAACACTGAGGCATAAAACCGCTAATGGAAGTTATGTACATGCAT
TAAGGAGAAAATGCACCCCTGAGCGTTGTTTGCGCTAAAGGTCATTTGTA
AGTTTGAGTTTGCCTTTCCTCCGACATTATTTAAAAGCGCCTACGTTACT
GACGGGGTTCAAACCTTTCCCCACACTCCAATAAGGTTGGGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_f04.g1 MSMg01no060_f04.g1 CHROMAT_FILE:
MSMg01no060_f04.g1 PHD_FILE: MSMg01no060_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:02 2005
         (360 letters)



>mm_chr12_45203184_45203943
          Length = 760

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttgggtcttcttgcttgcacagtaagccctcacccacttagccatatctccaggccc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttgggtcctcttgcttgcacagtaagccctcacccacttagccatatctccaggccc 260

                                                                       
Query: 61  acctcagcagctttccacagaagacaaaatggcttccaaaaattttcttcagtagggccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctcagcagctttccacagaagacaaaatggcttccaaaaattttcttcagtagggccc 320

                                                                       
Query: 121 ttcagctactaagtgggattggatttctccaagccaattcccttcacctggctataaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagctactaagtgggattggatttctccaagccaattcccttcacctggctataaagt 380

                                                                       
Query: 181 ctcattcaagagccatgtagagggataaagacagcatcaggacctttggcatagagaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ctcattcaagagccatgtagagggataaagacagcatcaggacctttggcatagagagga 440

                                                                       
Query: 241 ccccgtgttaaacagattgtcagagctttgagaaaaactttcttcagaattacagaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ccccgtgttaaacagattgtcagagctttgagaaaaactttcttcagaattacagaggaa 500

                                                                       
Query: 301 cattctcagatgggagttttctaagcaatccaaccacctctacttcaaatttgatatgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattctcagatgggagttttctaagcaatccaaccacctctacttcaaatttgatatgat 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)