BAC Information

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BAC

Clone NameMSMg01-060I11
Chromosome12 (Build37)
Map Location 58,865,028 - 58,865,455
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060I11.T7 (MSMg01no060_i11.b1)MSMg01-060I11.TJ (MSMg01no060_i11.g1)
ACCAG286951AG286952
length711709
length of high quality
(start - end)
369 (46 - 414)429 (75 - 503)
definitionCHROMAT_FILE: MSMg01no060_i11.b1 PHD_FILE: MSMg01no060_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:16 2005CHROMAT_FILE: MSMg01no060_i11.g1 PHD_FILE: MSMg01no060_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCACTACCTAAACATAATAAAAGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAG
TACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG
ATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAG
TCAATGGCCTTTCTCCACACCAAGAATAAACAGGCTGAGAAAGAAATTAG
GGAAAGAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCG
TGACTCTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCT
CTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATG
CTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAG
CAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTC
AACGAATTAGA
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCTGTAGTGTTGAAGACTTTTCTT
TCAAGTAGAGCACTTACCAACTATATCTTTTTTTTTTTTTGTTAAACTTG
TAGCACATAATAATTAACCTAATATTCATGATGATTTTAATTTTCTGATT
TTATCTCTGGGACTGTAGAATTGAAAGCAGCCTATTGACACCAATGCTTC
AGAATTCAATGAACTCATGATGATCATTAGAAGCAGAAATAAAACCGCCC
CCCATCTTCTGTGGTTGGAACATTAAAGTTTTAAAGCAATAAGCAGTTTT
AGCAGTTACTTGGAGTAGCATTGAAACCTTTTATAAACATCTTTTCACCC
TGAAGAACCCCACCTTCTTTCATGAGCACAAAAACAGAGAATCCTAGAGT
TAGGAATATTGTACATAGCCCACAGTGAGCATTTGTTTTATGTTTATTGA
AATTAGCATTTTTAAAAAATTCCTTCCAAAAGAAATACATTTCAACTGTG
GACTCACAGTGGTAAGAACCAGGTTTTCTGAAGAGGTACGCGACTTTTAC
CACCGTGATCGTCCTTTTCTTTTTATTTCAATCTCCGTATTAATCTTCCT
TACGCGCTCAAAATACTTTTTCTACTTCTTCTATCTTTCTCTCCCTTCAT
TTTGAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_i11.g1 MSMg01no060_i11.g1 CHROMAT_FILE:
MSMg01no060_i11.g1 PHD_FILE: MSMg01no060_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:17 2005
         (429 letters)



>mm_chr12_58864828_58865655
          Length = 828

 Score =  774 bits (400), Expect = 0.0
 Identities = 422/430 (98%), Gaps = 3/430 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtagtgttgaagacttttctttcaagtagagcacttaccaactatatcttttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 attctgtagtgttgaagacttttctttcaagtagagcacttaccaactatatc--ttttt 258

                                                                       
Query: 61  ttttttgttaaacttgtagcacataataattaacctaatattcatgatgattttaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttttttgttaaacttgtagcacataataattaacctaatattcatgatgattttaatttt 318

                                                                       
Query: 121 ctgattttatctctgggactgtagaattgaaagcagcctattgacaccaatgcttcagaa 180
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 319 ctgattttatctctgggactatagaattgaaagcagcctattgacgccaatgcttcagaa 378

                                                                       
Query: 181 ttcaatgaactcatgatgatcattagaagcagaaataaaaccgccccccatcttctgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcaatgaactcatgatgatcattagaagcagaaataaaaccgccccccatcttctgtgg 438

                                                                       
Query: 241 ttggaacattaaa-gttttaaagcaataagcagttttagcagttacttggagtagcattg 299
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 439 ttggaacattaaaagttttaaagcaataagcacttttagcagttacttggagtagcattg 498

                                                                       
Query: 300 aaaccttttataaacatcttttcaccctgaagaaccccaccttctttcatgagcacaaaa 359
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 499 aaaccttttataaacatcttttcaccctgaagaacttcaccttctttcatgagcacaaaa 558

                                                                       
Query: 360 acagagaatcctagagttaggaatattgtacatagcccacagtgagcatttgttttatgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acagagaatcctagagttaggaatattgtacatagcccacagtgagcatttgttttatgt 618

                     
Query: 420 ttattgaaat 429
           ||||||||||
Sbjct: 619 ttattgaaat 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 828
Length adjustment: 9
Effective length of query: 420
Effective length of database: 819
Effective search space:   343980
Effective search space used:   343980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)