Query= MSMg01no060_l16.b1 MSMg01no060_l16.b1 CHROMAT_FILE:
MSMg01no060_l16.b1 PHD_FILE: MSMg01no060_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:31 2005
(344 letters)
>mm_chr12_85676992_85677735
Length = 744
Score = 661 bits (342), Expect = 0.0
Identities = 342/342 (100%)
Strand = Plus / Plus
Query: 1 aagagtgagatgtctgcaaatacaagagtaggaatggaggtttcagtctgtagctcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagtgagatgtctgcaaatacaagagtaggaatggaggtttcagtctgtagctcacag 260
Query: 61 tgcctagaattcactgtggcagcccaggctggctacatttttttaaccttcctgccctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctagaattcactgtggcagcccaggctggctacatttttttaaccttcctgccctta 320
Query: 121 gtctcctaaggaatataggaatataactttcttccatcattctatgtgacacttttttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctcctaaggaatataggaatataactttcttccatcattctatgtgacacttttttgg 380
Query: 181 atttttctaatcattaggccatttaattagtcctacagtaaatagtctatatgtaggtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttctaatcattaggccatttaattagtcctacagtaaatagtctatatgtaggtta 440
Query: 241 tatcctattgtaactgaggggcatatcttgagaggtggacagaagtatcagtatttctag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcctattgtaactgaggggcatatcttgagaggtggacagaagtatcagtatttctag 500
Query: 301 gtaatgttagattccccaccacagatccggttttgttttgtt 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaatgttagattccccaccacagatccggttttgttttgtt 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_l16.g1 MSMg01no060_l16.g1 CHROMAT_FILE:
MSMg01no060_l16.g1 PHD_FILE: MSMg01no060_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:32 2005
(500 letters)
>mm_chr12_85814541_85815441
Length = 901
Score = 835 bits (432), Expect = 0.0
Identities = 483/502 (96%), Gaps = 7/502 (1%)
Strand = Plus / Minus
Query: 1 gttacaggtgagctgccatg-a---gagtactgggaacttggtcctccccaagaacagca 56
|||||||||||| ||||||| | | || ||||||||||||||||||||||||||||||
Sbjct: 793 gttacaggtgagttgccatgtatgtgggtgctgggaacttggtcctccccaagaacagca 734
Query: 57 agtgctctcaacagtggaggcatttctccagcccagtttgggttattactgagacagctg 116
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 733 agtgctctcaacagcggaggcatttctccagcccactttgggttattactgagacagctg 674
Query: 117 tcttgcagtcttccttccttctacagtgctggaatgacaagggtgtgtgccacaaaagac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcttgcagtcttccttccttctacagtgctggaatgacaagggtgtgtgccacaaaagac 614
Query: 177 accaaccaaatcatctcttgcccttgacctaacagttttacattcctttctctcccagac 236
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 613 accaaccaaatcatctcttgcccttgacctaacagttttacactcctttctctcccagac 554
Query: 237 ttgtacttctgcaagaacgtgccaaagttggaaaaaaaaccctagcatttactttttaac 296
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 553 ttgtacttctgcaagaacgtgccaaagttgg-aaaaaaaccctagcatttactttttaac 495
Query: 297 ctcagtctttactgtgaaagctgaccaattgtttttaattggcaaaacgactcttattta 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 494 ctcagtctttactgtgaaagctgaccaattgtttttaattggcaaaatgactcttattta 435
Query: 357 gaa--agtctatcaaagaattaaaaaattctcaggaaaacagggaatgaatcttttaaat 414
||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaaacagtatattaaagaattaaaaaattctcaggaaaacagggaatgaatcttttaaat 375
Query: 415 aacttccattattttttaaatgctatctcaatttccctaatttttattagtattttccct 474
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 374 aacttccattatttttaaaatggtatctcaatttccctaatttttattagtattttccct 315
Query: 475 aaataatataaaatcagttgta 496
|||||||||||| |||||||||
Sbjct: 314 aaataatataaagtcagttgta 293
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space: 436590
Effective search space used: 436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
