BAC Information

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BAC

Clone NameMSMg01-060M08
Chromosome12 (Build37)
Map Location 56,709,494 - 56,710,098
singlet/doubletsinglet
Overlap geneGarnl1
Upstream geneLOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2
Downstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060M08.T7 (MSMg01no060_m08.b1)MSMg01-060M08.TJ (MSMg01no060_m08.g1)
ACCAG287137AG287138
length715727
length of high quality
(start - end)
117 (72 - 188)613 (74 - 686)
definitionCHROMAT_FILE: MSMg01no060_m08.b1 PHD_FILE: MSMg01no060_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:34 2005CHROMAT_FILE: MSMg01no060_m08.g1 PHD_FILE: MSMg01no060_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTATACGACTCCTATTTCCAGAGATCCGCGGAATCA
TTATCTCCCCAACACATGGCGGCTCGTGCCTTTAATCAATAGTACTCAGG
AAGCAGAGGTGGATATCTCTGAATTCAAGGTCTGCCTGATTTATGGAGTC
CCAGGCCAGGCAGGACTCCACAGCGAGACTGTGTCTCACACAAGCAGACA
GATAGACAGACATACAGAATTCCTATCCAGCTGTGCTGAGGTCATTTGAG
GCAGCTGGCATCCCTGGCTGACTAGGTGAAGGTCCTCTGTAAAGACACAC
AGTCCATGGAAGCTCTTAGGAACATGACTATGTCTTGACTATGGAGACAG
GTTTTCTTGACCCCTCTGCGGGTTCCTCTGACACACAGCTAAACCTGTAC
AGTGGCCCAACCGCCCCTTCTGATATGTGGACCCCACGGGGCATACCGAA
GCTCTAGTGCGCCCTTAGCCACACACCGCCCGAGCCTTGCCCTTCTGAAC
CGCCTATTAATGAACGGCCTCTTTGTTCTCTGCCTCCTGCTTAACACCTT
GCCTTTGGTTCCATTTTGCACCCCTCTTCTCTTTTGCATTATCTCTCTCT
CCCCTCGACTACCCCTCACCCCTGCATCCTCACAACACCGCCACCGTGTT
ACCACGTGCCCCCTGTCTCAACTTTCACACCATCTCTACCTCGCGCTTAT
CGTTTTTCCACCTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAACAGTTAAAGAGTTGACTGATAA
CTTTATTACCTACATGTATAATATGCACATATAGATACATCTATTCATAT
ACATACACCACTTTTTATAATTACTTTTAGAAAAATCTATGATTCAGATT
TTTATCTAGAGAAAAATTATAAAAATTATTTCATTATAAAAAATAATAAA
TTCTAAAATATAATTATTCAAATAAATTATGCCATCAAAATCAGAAAAAA
AAACTTAGGGTATCTGTGAAGACATAGAGTGGCACCCAGCTCCCCTCATT
CTAACCTCAGTCTTGCTGTTAATCCCACGCTAGGAGACACATGTGTAAAT
AGCTTAGGCTGTGTGGCTGTCCGTCAGCCTTTCTGAATCTTTAAGGAGGA
CATGTCAGCAGAATTAGACAATGGTTTAGGTGCTTTAAGCTCAATGTCTT
TTTAATGCTATTTTAAACTTTCCTCCAAGACATTGAAATAATCTAAAATA
AAATGTTTCCGCTCCTTCAGAAGATACTTATATAAAAAACCTAAACATTA
CTTATAAGTGCCAAGATGAAAATGAGTTTTCTTGAGTATATTATCACAAT
CTATAAATTTGTTTGATACTTTTAAAAATCAGATTCCTGCTCAAATCTAT
TCAGTAGATTAGTCTGAGTATATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_m08.g1 MSMg01no060_m08.g1 CHROMAT_FILE:
MSMg01no060_m08.g1 PHD_FILE: MSMg01no060_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:35 2005
         (613 letters)



>mm_chr12_56709087_56710098
          Length = 1012

 Score = 1133 bits (586), Expect = 0.0
 Identities = 601/606 (99%), Gaps = 1/606 (0%)
 Strand = Plus / Minus

                                                                        
Query: 8    gttaaagagttgactgataactttattacctacatgtataatatgcacatatagatacat 67
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1012 gttaaagagttgactgataactttattacctacatgtataatatgtacatatagatacat 953

                                                                        
Query: 68   ctattcatatacatacaccactttttataattacttttagaaaaatctatgattcagatt 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  ctattcatatacatacaccactttttataattacttttagaaaaatctatgattcagatt 893

                                                                        
Query: 128  tttatctagagaaaaattataaaaattatttcattataaaaaataataaattctaaaata 187
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 892  tttatctagagaaaaattataaaaattatttcattataaaaagtaataaattctaaaata 833

                                                                        
Query: 188  taattattcaaataaattatgccatcaaaatcagaaaaaaaaacttagggtatctgtgaa 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  taattattcaaataaattatgccatcaaaatcagaaaaaaaaacttagggtatctgtgaa 773

                                                                        
Query: 248  gacatagagtggcacccagctcccctcattctaacctcagtcttgctgttaatcccacgc 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  gacatagagtggcacccagctcccctcattctaacctcagtcttgctgttaatcccacgc 713

                                                                        
Query: 308  taggagacacatgtgtaaatagcttaggctgtgtggctgtccgtcagcctttctgaatct 367
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 712  taggagacacatgtgtaaataggttaggctgtgtggctgtccgtcagcctttctgaatct 653

                                                                        
Query: 368  ttaaggaggacatgtcagcagaattagacaatggtttaggtgctttaagctcaatgtctt 427
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 652  ttaaggaggacatgtcagcagaattagacaatggtttaggtactttaagctcaatgtctt 593

                                                                        
Query: 428  tttaatgctattttaaactttcctccaagacattgaaataatctaaaataaaatgtttcc 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  tttaatgctattttaaactttcctccaagacattgaaataatctaaaataaaatgtttcc 533

                                                                        
Query: 488  gctccttcagaagatacttatataaaaaacctaaacattacttataagtgccaagatgaa 547
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 532  gctccttcagaagatacttatat-aaaaacctaaacattacttataagtgccaagatgaa 474

                                                                        
Query: 548  aatgagttttcttgagtatattatcacaatctataaatttgtttgatacttttaaaaatc 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473  aatgagttttcttgagtatattatcacaatctataaatttgtttgatacttttaaaaatc 414

                  
Query: 608  agattc 613
            ||||||
Sbjct: 413  agattc 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space:   604206
Effective search space used:   604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)