BAC Information

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BAC

Clone NameMSMg01-061A03
Chromosome12 (Build37)
Map Location 32,072,975 - 32,073,345
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
Downstream geneLOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061A03.T7 (MSMg01no061_a03.b1)MSMg01-061A03.TJ (MSMg01no061_a03.g1)
ACCAG287319AG287320
length692745
length of high quality
(start - end)
250 (65 - 314)372 (73 - 444)
definitionCHROMAT_FILE: MSMg01no061_a03.b1 PHD_FILE: MSMg01no061_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:52 2005CHROMAT_FILE: MSMg01no061_a03.g1 PHD_FILE: MSMg01no061_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCTTTTNNNAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCCGAGAGAATCCGCGGAATTCACTCATCTTCCGGTAACTAGCTAGA
CCTTGGGATACAGATTTTAACATTACAATACAAAGCAACTGACCAAAGTC
TACACCTAGGTTTGGGGATTTTATGTGTATATTTACTTTGTCATGCTGGA
GGTAAACCCAAGGCTTCGTGCATGCCAAACAAGTGTTCCACCACGGATTA
CACCCCTAGCTCCAAACCTGAGATTGAGAATAATCACGTTTCCTCCGTTG
TATTTGTCTTCTGTTCAGATGGCTGCGGTACTGCCTATAGAGTAGATTAT
TGCAATGTATAGATGTTTCTACATCTTATTTCCTTACCAAAATAGAAAAC
CTATTAACTTACCTTGCCGAAGCAACGCTAATATACCACCCCCCTCGAAG
ATTTGAATATTTACGGGAACATATTTCCCAAACCACGAGAAAAAACTGTC
TCTATTCCTACCCGTCTTTCTATATTTTCGACGGGAATAACTACGCAAAC
CCTTTCGGTTACTCAACAATAAACCCCAACTTATGTCTCACCTTGGCATT
TCCAACCCATAGCCAGAACCCTAAAAAATCCCCAAATTTAAAACCTTAAG
TTTTTTTTTTCCAACCTTACTTACCACCTCCGTTTTTCCTTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGAAACATAATCATCTGACCTATGAA
TGACTGGTATCTGTTTGTCTAGAGAAGGGGGTTACTGACAATTTGCTGTT
TAAATTCAGTGCTAAATAGTTGATATCATCCACTGAGTGGAGTAGAAACT
TGTTTTGTTTTCCTTAAAATCAGAGACTTTGGTAAAAACCTCAGGTATAA
GTTACCCCTGTATCAGCTTTTATGTTGGAGTCAAAAGAGCCCAGTATGGC
ACAATCCTCCCAGCCCCGTGCAGGGATGGCGCACATAGGGCTGTTTATAC
AAGCTGATTAAGATTTCAGTTTGATTGCATTCAGGTACCTGAAAGCAAGC
AGTTTCAGGCTATGTTACCCCCCAACATCTTGAAGTGCAGAAATTGTTAT
TGCTTGACCATATGCTTTATATTCTGAGTATACCTTATACCTTGCAAGAT
GCACGACCTGTTAGGACCACCAGTTATTATCGGCCCCCCCTTTTGCCTCC
CCTTTTCCCCTTTTATCCTTTTTTTTCTCCTCTCTCTCCCTTTTTTAACC
CCCCTTTATCCCTCCCACTCTATACCCCGCGCTTGGTTCACAATTCATCC
CACTAGTCGTATTACCACATCACCAAATGTTCTCGTCTTGGATACACCAA
CTTTCCTACCCTACCTTTATTACGCTCACCCTTCTTCATTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_a03.g1 MSMg01no061_a03.g1 CHROMAT_FILE:
MSMg01no061_a03.g1 PHD_FILE: MSMg01no061_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:52 2005
         (372 letters)



>mm_chr12_32072775_32073545
          Length = 771

 Score =  671 bits (347), Expect = 0.0
 Identities = 365/377 (96%), Gaps = 11/377 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaaacataatcatctgacctatgaatgactggtatctgtttgtctagagaagggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tttgaaacataatcatctgacctatgaatgactggtatctgtttgtctagagaagggggt 512

                                                                       
Query: 61  tactgacaatttgctgtttaaattcagtgctaaatagttgatatcatccactgagtggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tactgacaatttgctgtttaaattcagtgctaaatagttgatatcatccactgagtggag 452

                                                                       
Query: 121 tagaaacttgttttgttttccttaaaatcagagactttggtaaaaacctcaggtataagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tagaaacttgttttgttttccttaaaatcagagactttggtaaaaacctcaggtataagt 392

                                                                       
Query: 181 tacccctgtatcagcttttatgttggagtcaaaagagcccagtatggcacaatcctccca 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tacccctgtatcaacttttatgttggagtcaaaagagcccagtatggcacaatcctccca 332

                                                                       
Query: 241 gccccgtgcagggatggcgcacatagggctgtttatacaagctgattaagatttcagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gccccgtgcagggatggcgcacatagggctgtttatacaagctgattaagatttcagttt 272

                                                                       
Query: 301 gattgcattcaggtacctgaaagcaagcagtttcaggctatgtta-----ccccccaaca 355
           |||||||||||||||||||||||||||||||||||||||||||||     |      |||
Sbjct: 271 gattgcattcaggtacctgaaagcaagcagtttcaggctatgttatttggc------aca 218

                            
Query: 356 tcttgaagtgcagaaat 372
           |||||||||||||||||
Sbjct: 217 tcttgaagtgcagaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 771
Length adjustment: 9
Effective length of query: 363
Effective length of database: 762
Effective search space:   276606
Effective search space used:   276606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)