Query= MSMg01no061_d02.b1 MSMg01no061_d02.b1 CHROMAT_FILE:
MSMg01no061_d02.b1 PHD_FILE: MSMg01no061_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:06 2005
(308 letters)
>mm_chr12_108930852_108931559
Length = 708
Score = 580 bits (300), Expect = e-170
Identities = 306/308 (99%)
Strand = Plus / Minus
Query: 1 gttatttatttaaaaataaaaatcaattatggcattctcctaaaaggcaacccggtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gttatttatttaaaaataaaaatcaattatggcattctcctaaaaggcaacccggtgttt 472
Query: 61 gaagagacattggcagagggtgagagaatcacaggttcacccgggctggcacctttggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaagagacattggcagagggtgagagaatcacaggttcacccgggctggcacctttggct 412
Query: 121 gtgaactgctggcacacattctctgcaagagctcttggttagccatgcatggctccccac 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gtgaactgctggcacccattctctgcaagagctcttggttagccatgcatggctccccac 352
Query: 181 tcctctggccacgataaagctgtagaatctaatgtattctgagtcagaccaagtgccgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tcctctggccacgataaagctgtagaatctaatgtattctgagtcagaccaagtgccgct 292
Query: 241 catgaagggggataaagggggcccgcttgagtaactgtaataattggaaaattattttga 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 catgaagggggaaaaagggggcccgcttgagtaactgtaataattggaaaattattttga 232
Query: 301 tagcctga 308
||||||||
Sbjct: 231 tagcctga 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_d02.g1 MSMg01no061_d02.g1 CHROMAT_FILE:
MSMg01no061_d02.g1 PHD_FILE: MSMg01no061_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:06 2005
(641 letters)
>mm_chr12_108792189_108793229
Length = 1041
Score = 1075 bits (556), Expect = 0.0
Identities = 622/648 (95%), Gaps = 7/648 (1%)
Strand = Plus / Plus
Query: 1 attggtgcacaaagtccttagagttggaaacttttgcgtaagctagattctgctaagcag 60
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 194 attggtgcacaaagtccttagtgttggaaacgtttgcgtaagctagattctgctaagcag 253
Query: 61 ggagaacaacgtaggagtggatggaaccaagaaccgactgtgctctggggcaggatgcaa 120
|||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 254 ggagaacaacataggagtggatgaaaccaagaaccgactgtgctctggggaaggatgcaa 313
Query: 121 gagacagccacacccccatcaggatgcaaactggagatgcccaaggatgcaaaggggtgg 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 314 gagacagccacacccccatcaggatgcaaactggaaatgcccaaggatgcaaaggggtgg 373
Query: 181 ctatcagctggtgacagagggatgataaggatg-------tccttaaagcatattttaca 233
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 374 ctatcagctggtgacagagggatgataaggatggtggctgtccttaaagcatattttaca 433
Query: 234 tgacggaatacatgcctgccagattccagagtctggattttattacaagagatgatgcat 293
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 434 tgacggaatacatgcctgccatattccagagtctggattttattacaagagacgatgcat 493
Query: 294 ggaagttacataaatgaaaaccttgatggcatacaaacaaagctccttttaaaaacattg 353
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 494 ggaagttacataaatgaaaaccttgatggcatacaaacgaagctccttttaaaaacattg 553
Query: 354 tggtccactgtgaatttgtgcaatcattggttccctccctaaggatatccaaggtgagta 413
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 554 tggtccactgtgaatttgtgcaaccattggttccctccccaagaatatccaaggtgagta 613
Query: 414 tcaggtaggaggaaagtgatgcctcctttaacatatgtgttcattgcctgccctggagcc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcaggtaggaggaaagtgatgcctcctttaacatatgtgttcattgcctgccctggagcc 673
Query: 474 ctgtcagtgccttgtgctctggctcaccttattgtctgggttcttactcaggactgcctg 533
||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 674 ctgtctgagccctgtgctctggctcaccttactgtctgggttcttactcaggactgcctg 733
Query: 534 ggttcttcttgccctgtagctccaatcagctaggctttgtgatcccctgggatttgcaga 593
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 734 agttcttcttgccctatagctccaatcagctaggctttgtgatcccctggggtttgcaga 793
Query: 594 tatacccctgtggctcaggtcagcaatctctatcccttctgggtctct 641
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatacccctgtggctcaggtcagcaatctctatcccttctgggtctct 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
