CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATACCGCGGA
ATTCCATATATATTATCCCTTGGCTTCAAACTTGGGATCCTCCTGCCCTA
GCCTCCAAGCACTAGAACAACAAGTGAATACTTCCATTCCCAGCTTCCTA
TGTCTTGTTAATTGACTGTGTGATCAATAATGTCTATCTCACATGCTCTT
CTCTCCAGTGCAATGATAGCAGACACTTCAATGTGAGCATGAACTGCAAC
AACACAGAGAAAGCAATGGCTGGATCCTGAATGCACAAAGAGCACACCGG
TGGCCCCTTCTAGTCTCTTACCTGTTCCCCATTTGGGTTTTCATAAATCA
ACAACAAACTAATAGACTACCATCAGAAAAAAGGTTCTTCAAAAGAACTT
CCCCTACCATGCTAGAGATGTGACTCCATGGCAGAGTAAGGCATGGCCAA
GAAAGTCCTGTGGTCAAGCCTCAGTACCAGCAAGGGAAAAAAAATGTTTC
CTAATAAAGAGTCTTTAGTGTAGTTTGTAATAGCTGAAGACTGAAAATAA
CCACAACGTTCAATATAGAAGAAAATGATAAATGTGCAGGCTATGAAAAC
CTCAAAATCATAATAAGTGTTTGCATTAATGGTTTTAACCACGGAAACAT
TGAACCATTAAACACATTATTCCAGCTTGGCTAAAATGATGCACATTCTG
TAATTTCTAGCCCCTTGCGCAATTGTAAGCCAGGTAACATTGGGTAACTC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTTGTAAAGTTATAAGAATAGAGTTA
AAGCAGGCCACAGTGTTACATGCCTGTAATAAGAGTACTCTGGAGGCACA
TGTAAGAGGATTTTGAGTTTGAAGCTAGCCTGAGCTATGTAATGAGATCC
TGTCTCAAAAGCAAGCAAACAAACCTAAAGACAGAAAGAGAAATAAAAAG
TACCCATCCTCAGATTGGATTTGAGAAGTTAATTTTTTTTTTAACTTTTC
TTTTTTTTTTTTTCCTCAAAACTTCTTGGCACAGGATAATGGGGTAAGCC
ACAGAAATAGTCTCCTACATGTTCCTGAACCACATGTTCCTGTTGAGTAT
CTGTGGCTCACCCGACTTCGCTGACGACTCTCTCATCTCAGTTCCAGATA
GTCCTGGAGAGCCACATCAGCACTTCAACCACGCCTGTAGCTTCTGCAGA
CGTCTTGGCTGCAGCCTGCCTGGCTCATCCTCTTTAGCACTCACAAGTAA
GTACCTCTGAACTTGCCTGGCTGTAAGTAGATTAGCAACAGTACCCACGA
CTCCCTAACCCCATTCTCGCCTGTCTTTTCCTTTCTAACGTTTACCCACT
TTGCGCTTTTACTTTCCTTGTTACTCACGCCATCTTTCTCGATCTTTGTT
CAATTCACCG

Query= MSMg01no061_j02.b1 MSMg01no061_j02.b1 CHROMAT_FILE:
MSMg01no061_j02.b1 PHD_FILE: MSMg01no061_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:35 2005
         (483 letters)



>mm_chr12_118839173_118840058
          Length = 886

 Score =  785 bits (406), Expect = 0.0
 Identities = 464/486 (95%), Gaps = 10/486 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattccatatata--ttatcccttggcttcaaacttgggatcctcctgccctagcctcc 60
           ||||||||||||||   ||    ||||||||||||||||||||||||  |||||||||||
Sbjct: 785 gaattccatatatagcata---gttggcttcaaacttgggatcctcccaccctagcctcc 729

                                                                       
Query: 61  aagcactagaacaacaagtgaatacttccattcccagcttcctatgtcttgttaattgac 120
           ||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||
Sbjct: 728 aagcactagaacaacaagtgaatacctccattcccagcttcc--tgtcttgttaattgac 671

                                                                       
Query: 121 tgtgtgatcaataatgtctatctcacatgctcttctctccagtgcaatgatagcagacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 670 tgtgtgatcaataatgtctatctcacatgctcttctctccagtgcaatgatagcataccc 611

                                                                       
Query: 181 ttcaatgtgagcatgaactgcaacaacacagagaaagcaatggctggatcctgaatgcac 240
           | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 610 tgcaatgtgagcatgaactgcaacaacacaaagaaagcaatggctggatcctgaatgcac 551

                                                                       
Query: 241 aaagagcacaccggtggccccttctagtctcttacctgttccccatttgggttttcataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaagagcacaccggtggccccttctagtctcttacctgttccccatttgggttttcataa 491

                                                                       
Query: 301 atcaacaacaaactaatagactaccatcagaaaaaaggttcttcaaaagaacttccccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atcaacaacaaactaatagactaccatcagaaaaaaggttcttcaaaagaacttccccta 431

                                                                       
Query: 361 ccatgctagagatgtgactccatggcagagtaaggcatggccaagaaagtcctgtggtca 420
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 430 ccatgctagaaatgtgactccatggcagagtaaggcatggccaagaaagtcctggggtca 371

                                                                       
Query: 421 agcctcagtaccagcaagggaaaaaaaa-tgtttcctaataaagagt-ct-ttagtgtag 477
           |||||||||||||||||||||||||||| |||||||||||||||| | || |||||||||
Sbjct: 370 agcctcagtaccagcaagggaaaaaaaattgtttcctaataaagattcctcttagtgtag 311

                 
Query: 478 tttgta 483
           ||||||
Sbjct: 310 tttgta 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 886
Length adjustment: 10
Effective length of query: 473
Effective length of database: 876
Effective search space:   414348
Effective search space used:   414348
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)