BAC Information

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BAC

Clone NameMSMg01-061L02
Chromosome12 (Build37)
Map Location 30,356,145 - 30,356,674
singlet/doubletsinglet
Overlap geneMyt1l
Upstream geneAdi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061L02.T7 (MSMg01no061_l02.b1)MSMg01-061L02.TJ (MSMg01no061_l02.g1)
ACCAG287843AG287844
length799716
length of high quality
(start - end)
46 (81 - 126)530 (73 - 602)
definitionCHROMAT_FILE: MSMg01no061_l02.b1 PHD_FILE: MSMg01no061_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:44 2005CHROMAT_FILE: MSMg01no061_l02.g1 PHD_FILE: MSMg01no061_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCACGACCCGCGGATTCTTTC
TTCTTTCCACAAGCAATCCAGGAACTGCGCTGAGATTAATCCACAGAACT
CATTTGTCCAGACTTCCTGATACGTATACAGGGAGACTGACTGCAAACTG
GTTGTCTGTTATGGCCTATATCTTTTAGGACATGTATTTTCTGCTAGGCT
CTCTACTCATCCCTTATAGCCACCAACAGTCCTATATCTGCTGTGGCCTC
CGGATAATAGATCGCTCCCCACCCTCCTCATATTTCCCCTGAGCCACAGT
TTCTACCTTATATCTACCTTTATGTCCAGTAGACATCGTCGACCCCGAAA
CTACTACGTCACACACCAGTGAGATTCTCACAACCCTTTGAGAAATAATT
ACCATCTATGACCCCCATTACCTTCTGCCGCCCTTACATCATTTCCCCAC
TTACTATCTACCAGACCACATACACCATCGATCTAAATTCCTCCATCGTC
TGTACATATTCTTAACCTCTCCGCCTCCTATTCACAAAAAAGTCTATCCC
CAAACCACCCACCTGACAAATTAATCATTCCCATCTCTCAATAATACCAT
AGGATGCCCCTGTTCACTCGACACCTCACCTTTGTTCCCACATTGTCAAC
CAATCGAACTACCTAACAAAGCTCTATCGTTCCCCTTCCCCCCTTTCCTT
CCCTCCCCACTGACATTTACCCACGCAAAACGAATTTATCTCTATTATGT
CTCGATTAAATATCCTCTCTCCTTCATCTTCTCATATTCTTTATCTATA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGCTATCTTGTAGTCTGCAGGCTGGA
TATGTCTGACTACATGTTAACCTAATAAGCCAAGAAGACTGAAAGAGATG
AGGTACAAACATAGCTTGAATAGGGCCGGAGAGAGACAATAGCTTGCATG
AGGGAGGTTCCCTAATGTGGCTAAAGAGCAAGTGGGACAGAGAACACAGA
AAGAGATGCTCATCTTTCCATTCTGCTGGCTAATGGCATCATTTTGCAGA
ACAAAATGAGCTATTCTCTGGGGCTCAGGAATTAGCTCAATGCAGGGCAC
TTGCTAAGGCTCTAGGCCCTTCCCTGATACTCTACAGAAAGTCATTTTCT
TGATTAAAGTCACTTATACCCTCAGGAAAGAAACATATTTGAATGTCCCC
AGGTTGCTGATTTATTTTTGCTTTGGGCATTCTATTATTTTAAATCTTAT
AAATTTTATTTAAAAAAAAAAGCCCTTGCAAATAAATAACAGCCTCATAT
ACTAAAATTAACCAGACCCAAAGTCTATACAACTCAATGAGTTTCCATAC
AGTTAGAATAGGCATTCGAAATAGAATGCCTTGGAGCTTCACATTAAAAT
TTACACTTTAAGTTTTTACTATTTTTACGTATTTATCTACCCACTAACCC
ACCATATCCCCGGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_l02.g1 MSMg01no061_l02.g1 CHROMAT_FILE:
MSMg01no061_l02.g1 PHD_FILE: MSMg01no061_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:44 2005
         (530 letters)



>mm_chr12_30356065_30356994
          Length = 930

 Score =  986 bits (510), Expect = 0.0
 Identities = 525/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagctatcttgtagtctgcaggctggatatgtctgactacatgttaacctaataagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acagctatcttgtagtctgcaggctggatatgtctgactacatgttaacctaataagcca 551

                                                                       
Query: 61  agaagactgaaagagatgaggtacaaacatagcttgaatagggccggagagagacaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agaagactgaaagagatgaggtacaaacatagcttgaatagggccggagagagacaatag 491

                                                                       
Query: 121 cttgcatgagggaggttccctaatgtggctaaagagcaagtgggacagagaacacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cttgcatgagggaggttccctaatgtggctaaagagcaagtgggacagagaacacagaaa 431

                                                                       
Query: 181 gagatgctcatctttccattctgctggctaatggcatcattttgcagaacaaaatgagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gagatgctcatctttccattctgctggctaatggcatcattttgcagaacaaaatgagct 371

                                                                       
Query: 241 attctctggggctcaggaattagctcaatgcagggcacttgctaaggctctaggcccttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attctctggggctcaggaattagctcaatgcagggcacttgctaaggctctaggcccttc 311

                                                                       
Query: 301 cctgatactctacagaaagtcattttcttgattaaagtcacttataccctcaggaaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 310 cctgatactctacagaaagtcattttcttgattaaagtcacttatagtctcaggaaagaa 251

                                                                       
Query: 361 acatatttgaatgtccccaggttgctgatttatttttgctttgggcattctattatttta 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 250 acatatttgaatgtccccaggttgctgatttatttttgctttgggtattctattatttta 191

                                                                       
Query: 421 aatcttataaattttatttaaaaaaaaaagcccttgcaaataaataacagcctcatatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 190 aatcttataaattttatttaaaaaaaaaagcccttgcaaataaataacagcatcatatac 131

                                                             
Query: 481 taaaattaaccagacccaaagtctatacaactcaatgagtttccatacag 530
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 caaaattaaccagacccaaagtctatacaactcaatgagtttccatacag 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)