BAC Information

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BAC

Clone NameMSMg01-061P13
Chromosome12 (Build37)
Map Location 77,734,140 - 77,734,497
singlet/doubletsinglet
Overlap geneSpnb1
Upstream geneWdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3
Downstream geneChurc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P13.T7 (MSMg01no061_p13.b1)MSMg01-061P13.TJ (MSMg01no061_p13.g1)
ACCAG288055AG288056
length791750
length of high quality
(start - end)
218 (73 - 290)344 (71 - 414)
definitionCHROMAT_FILE: MSMg01no061_p13.b1 PHD_FILE: MSMg01no061_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:05 2005CHROMAT_FILE: MSMg01no061_p13.g1 PHD_FILE: MSMg01no061_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACAGGATCCGCG
GAATTCCCTCATTGAGAACGGGAGGTTGGCACAAAGTCCCATCCCTAGTC
AAGAGGCTATTTCAATTGATAGCTGCTGGGAATGGGAAAACCACCGTCTT
CAATGGAATAATACTGGGGATATGAACCACACCCTGGGGCAGGCCCCATG
CCCAGTAGCTGGTCGAAACAATCAGACTTCATGGGTTTTTTGTAGTTGTT
GCTGGTTTGTTTGGGATTGTGTTTTCGTGTTTGTTTGTTTTAGAGAGAGA
AAGAACATGAACTTGGTATTTTCTGTAAGGTGCCAGACGATCTGGCAGCA
CCTGTTTTACTCTTCCTCTCATTTCCCCTTTCCCCCCCTCCTCCTTCCCT
TTCCCTCACTTTCTCCCCCCCCCCCTCCCCTTCCCCCCCCTCCTTTCCCC
CCCCCCTCCCTCTTTCCTTTTATCCCCCTCCCTCCCCCCCCTCCCCCCTC
CTCCCTTTTTTCCACACCCCCCCCCCCATTTTCCCCCCCCCATCTCCTTT
TCTTTTTCTCCTCCCCCCCCTTTTTTTTTTTTCCCTCCCCCTCCCCCCCC
TCTTCCCCCTTTTCCCCCTTCCTCACCCCCCACCTCATCCCCCCAACTCT
CTCCCCCTCTCCCCCCACCCCCTTCCCCATCCTCTCCCCCCCCCCGCTTT
TCCTTCCCTCCTCTTATCTTCTCCCCCCCTTTCCCCCACTCAATTACTTC
ACCCCGCAACATCCCCCCCCCCCCTCTTCCCCCTCCCCCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGGAGGGCTTTTCCTTACTCCCCCCCGC
CCCAGCTCCTCCTGTGTGCTGTGATTCCCACATTCTCATTGCCAATGATT
AGTTGAATATACGCCTTTCCTACAAGACTGTGGGCTCATGGCACCCAGAG
AAGCCTGTCTCATTTGTCTCTCCATTCTCAGACCTCCAAGTTCGACGCCC
AGTAGGCACTTTCAGTTGTACTGCAGGTGACTAGTGAAGCAGTTACTCGG
TTCTGTCATGTGGCTGTTCTGTGCTAGGCCTAATGACACAGAGCATGCTC
TCAAGCAGTTCCCGCTGAAGCAAACACCGGTGAAGAGTTGGGCTGTGCGG
AACCCCCATCTATGTACGTTAATGGAAGTGAAGGCTTGAGCTGAAAGCTG
TTCATGGCAGATGATATGGCTTCACCCCCAATATCGTTAGTCAAGGAGTC
TTGACTTCCAGCTTTGAGATGGTGACAAAGTACCTCCACAGTAAAACATT
ATACCCTGCTCCGGTCAGCCCATGCTTAACCAGCTTATATGGGTAACAAC
AGTTACCTCTTGTGAATAGTGCCGGGTCCGTTCAGGCAATCTCCTTGAGA
GTAATACCGAAACTGTTTATTTTGTATTGTATTACTTATACCCCCCTTAT
TTATTATCATCTAATATAATTATTCTTCAGTTCATGCGAAAATAACACCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p13.g1 MSMg01no061_p13.g1 CHROMAT_FILE:
MSMg01no061_p13.g1 PHD_FILE: MSMg01no061_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:05 2005
         (344 letters)



>mm_chr12_77733954_77734697
          Length = 744

 Score =  600 bits (310), Expect = e-176
 Identities = 340/358 (94%), Gaps = 14/358 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggagggcttttccttactccc-------ccccg-------ccccagctcctcctgtg 46
           ||||||||||||||||||||||||       |||||       |||||||||||||||||
Sbjct: 187 tcaggagggcttttccttactccccgccctgccccgccccccaccccagctcctcctgtg 246

                                                                       
Query: 47  tgctgtgattcccacattctcattgccaatgattagttgaatatacgcctttcctacaag 106
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 247 tgctgtgattcccacattctcattgccaatgattagttgaatatacatctttcctacaag 306

                                                                       
Query: 107 actgtgggctcatggcacccagagaagcctgtctcatttgtctctccattctcagacctc 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actgtgggctcatggcacccagagaagcctgtctcatttgtctctccattctcagacctc 366

                                                                       
Query: 167 caagttcgacgcccagtaggcactttcagttgtactgcaggtgactagtgaagcagttac 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caagttcgacgcccagtaggcactttcagttgtactgcaggtgactagtgaagcagttac 426

                                                                       
Query: 227 tcggttctgtcatgtggctgttctgtgctaggcctaatgacacagagcatgctctcaagc 286
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tcggttctgtcatgtggctggcctgtgctaggcctaatgacacagagcatgctctcaagc 486

                                                                     
Query: 287 agttcccgctgaagcaaacaccggtgaagagttgggctgtgcggaacccccatctatg 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agttcccgctgaagcaaacaccggtgaagagttgggctgtgcggaacccccatctatg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)