Query= MSMg01no062_b06.b1 MSMg01no062_b06.b1 CHROMAT_FILE:
MSMg01no062_b06.b1 PHD_FILE: MSMg01no062_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:17 2005
(792 letters)
>mm_chr12_45355936_45357127
Length = 1192
Score = 532 bits (275), Expect = e-155
Identities = 298/309 (96%), Gaps = 8/309 (2%)
Strand = Plus / Plus
Query: 1 ggcctccattccctgttgcctgtcagcctttata----atctcttggtcccttaaagcta 56
|||||||||||||||||||||||||||| | | |||||||||| | |||||||||
Sbjct: 201 ggcctccattccctgttgcctgtcagcc---a-agaacatctcttggttctttaaagcta 256
Query: 57 cctgaatatgtgaagtgaagtttctaagaaagaaagggaaaactgggaatctgtgataaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctgaatatgtgaagtgaagtttctaagaaagaaagggaaaactgggaatctgtgataaa 316
Query: 117 gattatacaaggctgactaagtagaacctcctgattgtggagacctggagtggtacaggt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 317 gattatacaaggctgactaagtagaacctcctgattgtggagacctggagtggtagaggt 376
Query: 177 ctggagccaaattttcttgagctatctctggatgttttaatagccattcatacctcactt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctggagccaaattttcttgagctatctctggatgttttaatagccattcatacctcactt 436
Query: 237 tttcttaaagaataattcaataaactttattgtttctagttaggatttaattaatagtct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttcttaaagaataattcaataaactttattgtttctagttaggatttaattaatagtct 496
Query: 297 tatttcttt 305
|||||||||
Sbjct: 497 tatttcttt 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 1192
Length adjustment: 10
Effective length of query: 782
Effective length of database: 1182
Effective search space: 924324
Effective search space used: 924324
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_b06.g1 MSMg01no062_b06.g1 CHROMAT_FILE:
MSMg01no062_b06.g1 PHD_FILE: MSMg01no062_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:17 2005
(831 letters)
>mm_chr12_45479145_45480375
Length = 1231
Score = 1464 bits (757), Expect = 0.0
Identities = 805/821 (98%)
Strand = Plus / Minus
Query: 11 gaaagggaagactatgtcgatcacaggaaagtcctgccctaaaacaggaccatgaagcaa 70
||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1031 gaaagggaagagtatgttgatcacaggaaagtcctgccctaaatcaggaaaatgaagcaa 972
Query: 71 gagtctgcctgccagaaacaccatgaaaggcagactcagcacttgggtagtggagggtgc 130
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 971 gagtctgcctgccagaatcaccatgaaaggcagactcggcacttgggtagtggagggtgc 912
Query: 131 agagagggtgctccacgccagaatcaggcagcaaacactgacaacttctcggagatgttg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 agagagggtgctccacgccagaatcaggcagcaaacactgacaacttctcggagatgttg 852
Query: 191 gcaatggaagaaagaggggaaacagaatggaaactccagggagcagcagagatgaaaagt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gcaatggaagaaagaggggaaacagaatggaaactccagggagcagcagagatgaaaagt 792
Query: 251 gattttaggccacaggagacgtgaacacatttgtaggctgaggagacagaggcaacaagg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gattttaggccacaggagacgtgaacacatttgtaggctgaggagacagaggcaacaagg 732
Query: 311 aaaagcagagagaaatgaaagtccaagttggcaaacaggaataggacccagtgtagaggg 370
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 731 aaaagcagagagaaatgaaagtccaagttggcaaacagggataggacccagtgtagaggg 672
Query: 371 ctgggaaaaaggaacaacacaaagaatgagggactctttgccatactgccacacacacca 430
|||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 671 ctgggaaaaaggaacagcacagagaatgagggactccgtgccatactgccacacacacca 612
Query: 431 taaacacaggaatcgcttcaacatgctacgtcctgtgtgggctctttgtaagtcttctcc 490
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 611 taaacacaggaatcgcttcaacatgctacgtcttgtgtgggctctttgtaagtcttctcc 552
Query: 491 catgttggagagaaggctcttctaagtgaggctttctgtgatgggccaatgtatagacaa 550
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 551 catgttggagagaaggcttttctgagtgaggctttctgtgatgggccaatgtatagacaa 492
Query: 551 cagctgatttgcatactgcccagtctcctttctgagaaacagctggagtcagtcaaaatg 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagctgatttgcatactgcccagtctcctttctgagaaacagctggagtcagtcaaaatg 432
Query: 611 aaatgaaaggccagcacactttaacaggagtagaaagggccttgcaaccttgaacttgag 670
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaatgaaaggccatcacactttaacaggagtagaaagggccttgcaaccttgaacttgag 372
Query: 671 cctattagaataaacaaaacaaatttgctttgatgactcttaaaaaaacaataaataaaa 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cctattagaataaacaaaacaaatttgctttgatgactcttaaaaaaacaataaataaaa 312
Query: 731 gtgagtgaactaactccaacgtgaacaggatttgtttgttttgcttagcggcaatcattt 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtgagtgaactaactccaacgtgaacaggatttgtttgttttgcttagcggcaatcattt 252
Query: 791 atgcaaatgaccaagaagcaatgagtcctgggtattgccca 831
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgcaaatgaccaagaagcaatgagtcctgggtattgccca 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 831
Length of database: 1231
Length adjustment: 10
Effective length of query: 821
Effective length of database: 1221
Effective search space: 1002441
Effective search space used: 1002441
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
