Query= MSMg01no062_m03.b1 MSMg01no062_m03.b1 CHROMAT_FILE:
MSMg01no062_m03.b1 PHD_FILE: MSMg01no062_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:41 2005
(747 letters)
>mm_chr12_76555640_76556786
Length = 1147
Score = 1402 bits (725), Expect = 0.0
Identities = 740/745 (99%), Gaps = 1/745 (0%)
Strand = Plus / Plus
Query: 4 tatcttattcc-caacagtatgttttttacttagagaaattcataaggataatgtcaact 62
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tatcttattcaacaacagtatgttttttacttagagaaattcataaggataatgtcaact 262
Query: 63 ttgcatggaattccaatgctaaacactattttagtaatcaccaatactttgcaaagttat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgcatggaattccaatgctaaacactattttagtaatcaccaatactttgcaaagttat 322
Query: 123 attaaattatctaacaataggaagaagaaactggtgagatggctcagtggttaagagcac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attaaattatctaacaataggaagaagaaactggtgagatggctcagtggttaagagcac 382
Query: 183 tggctgttcctccagaggacctgggttcaattcccagcacccacatggcagctcacaact 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 383 tggctgttcctccagaggacctgggttcaattcctagcacccacatggcagctcacaact 442
Query: 243 gtaacttcagttccaggcaggcacgtggcacacaaacatgcatgaagacaaacattcata 302
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 gtaacttcagttccaggcaggcacgtggcacacaaacatgcaggaagacaaacattcata 502
Query: 303 tacataaaagaaaaatatatcaacatttaaaaagaaaagccttgagccaataaaaagtaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tacataaaagaaaaatatatcaacatttaaaaagaaaagccttgagccaataaaaagtaa 562
Query: 363 ttatcgtcttccttgaattaagataatttttttttaattaaagaaacccaaataatctga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttatcgtcttccttgaattaagataatttttttttaattaaagaaacccaaataatctga 622
Query: 423 cattcccatttcacgtgcagggtcattgaatcattcaacaaagtcatctgtagctttact 482
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cattcccatttcacttgcagggtcattgaatcattcaacaaagtcatctgtagctttact 682
Query: 483 tcataattaataatctagcaatttagaacttctttaatgtttggttatcttaaatgtaat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcataattaataatctagcaatttagaacttctttaatgtttggttatcttaaatgtaat 742
Query: 543 ctacacagtgtgaacttcagcaagcacaaaggttttcaaacattcctttatgtaataatt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctacacagtgtgaacttcagcaagcacaaaggttttcaaacattcctttatgtaataatt 802
Query: 603 ttgatctaaaacaactgcatttataggcatactgggcaagattagaaaagtctccaatcc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttgatctaaaacaactgcatttataggcatactgggcaagattagaaaagtctccaatcc 862
Query: 663 ttatagattagtttttatttttaaaaaataaagttgaaatttattcaaacaactattata 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttatagattagtttttatttttaaaaaataaagttgaaatttattcaaacaactattata 922
Query: 723 ggcactggagagactgctctgcagt 747
|||||||||||||||||||||||||
Sbjct: 923 ggcactggagagactgctctgcagt 947
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1147
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1137
Effective search space: 837969
Effective search space used: 837969
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_m03.g1 MSMg01no062_m03.g1 CHROMAT_FILE:
MSMg01no062_m03.g1 PHD_FILE: MSMg01no062_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:41 2005
(642 letters)
>mm_chr12_76706958_76707999
Length = 1042
Score = 1195 bits (618), Expect = 0.0
Identities = 630/634 (99%)
Strand = Plus / Minus
Query: 9 cactccaagcgaagagagaaaaggggcccgagcccttgcacagcctgccgccccaacaag 68
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 842 cactccaagcgaagagagaaaaggggcccgagcgcttgcacagcctgccgccagaacaag 783
Query: 69 aaccctgcttgttcagaattctcataacccatcaccttctgcttacaccagctcaaggaa 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aaccctgcttgttcagaattctcataacccatcaccttctgcttacaccagctcaaggaa 723
Query: 129 gcctttcttggctgcagagagaagcaccgagttctagaacccaccaagctccagattcct 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gcctttcttggctgcagagagaagcaccgagttctagaacccaccaagctccagattcct 663
Query: 189 aaacatagaagtgaggaaatacggtttcatctccagcaccggaaggtttaacttggagga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaacatagaagtgaggaaatacggtttcatctccagcaccggaaggtttaacttggagga 603
Query: 249 agagtggaagggaggacttaatcctagggagcacttcataaaggggaaatggatgttctg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agagtggaagggaggacttaatcctagggagcacttcataaaggggaaatggatgttctg 543
Query: 309 tgagaaccactgtgtgtggttcctagtacatggtaaagagctcttccgtgctcccttcag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgagaaccactgtgtgtggttcctagtacatggtaaagagctcttccgtgctcccttcag 483
Query: 369 gagcaaatacattcaccagaattgaagattggcctggcctcacccagaacaaggacacta 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gagcaaatacattcaccagaattgaagattggcctggcctcacccagaacaaggacacta 423
Query: 429 aaactaatttgggaagcattctatagttttctcagacagacatatcctgaacattttttc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaactaatttgggaagcattctatagttttctcagacagacatatcctgaacattttttc 363
Query: 489 ctcatatgtgaaatctggaatttaaaggtaatgatgacataacgtgtgtgaaaacgccac 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 362 ctcatatgtgaaatctggaatttaaaggtaatgatgacataacgtgtgtgaaaatgccac 303
Query: 549 ggagagacgcattgttttgtgtgctaacttttaaaattaataggaaaatttctggagcca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggagagacgcattgttttgtgtgctaacttttaaaattaataggaaaatttctggagcca 243
Query: 609 ggcagtggtggcacaggccttgagaggcaggggc 642
||||||||||||||||||||||||||||||||||
Sbjct: 242 ggcagtggtggcacaggccttgagaggcaggggc 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
