BAC Information

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BAC

Clone NameMSMg01-062M12
Chromosome12 (Build37)
Map Location 48,230,945 - 48,231,322
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664952, Nova1
Downstream geneLOC100039190, EG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062M12.T7 (MSMg01no062_m12.b1)MSMg01-062M12.TJ (MSMg01no062_m12.g1)
ACCAG288675AG288676
length1,2131,188
length of high quality
(start - end)		731 (88 - 818)579 (126 - 704)
definitionCHROMAT_FILE: MSMg01no062_m12.b1 PHD_FILE: MSMg01no062_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:44 2005CHROMAT_FILE: MSMg01no062_m12.g1 PHD_FILE: MSMg01no062_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATTTATTNNNNNNGCAATGGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTTTCAGTTCTGACCCTTAGAGATTCCACCTCAAA
CCAGTCAGAATGGCTAAGACCTTAAATTCAGACACCAGATGCTGGTGAGG
ATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTG
TACAACCACTCTGGAAATCAGTCTGGCAGTTCCTTAGAAAATTGGACATA
GTACTACTGGAGGATCCAGCAATGCCTCTCCTGGGCATATATTCAGAAGA
TGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCT
TATTTATAATATCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAA
GAATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGC
TATTTAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGG
AGGGCATCATCCTGAGTGAGGTAACACAATCACAAAGGAACTCACACAAT
ATGTACTCACTGATAAGTGGATATTAGCCCAAAATTTAGGATACCCAAGA
TATAAGATACAATCTGCTAAACACATGAAACTCAAGAAGAATGAAGACTG
AAGCGTGGACACCATGCCCCTCCTTAGAATTGGGAACAAAACACCCATGG
AAGGAGTTACAGAGACAAAGTTTGGAGCTGTGACGAAAGGATGGACCATC
TAGAGACTGCCATATCCAGGGATCCATCCCATAATCAGCTTCCAAACACT
GACACCATTGCATACACTAGCAAGAATTTGCTGAAAGGACCCAGATTTGG
CTGTCTCTTGTGAGACTATGCCAGGGCCTAGCAAACCCAGAAGTGGATGC
TCAGAGTCAGCTAGTTGATGGATCACAGGGCTCCCAATGGAGGAGCTAAA
GAAAGTACCCCAGGATCTTAAGGGATCTGCAACCCTATAGTTGGAACACC
ATTATGAATTAACCCGTACCCTGGAGTTCTTGACTTAACCTGCATATGGG
TGGGTAAGAAAAATTTAATTTCATTTTCTTTTTTCTCTTCTCCCTCTTTT
TCGTTTCTTCTTTTTTTATTTATCTTTTTTTCTCTTCTTCTTTTATTTTT
TTTCCTTTATCTTATTTTCTTTTTTTTTTTCTTTTCTTTTTCTTTTTCNT
GTTTTCTATTTTT

CCCTATATTTTTNTTAAGATGGNAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTTTTAAATATGATTACTTTGAA
AGCAATGTGTCATTCTTCCTTAAAGGTCGTTTTTTAATTTAATTTTAAAT
TTTTCAACAATTTCATACACAAGAAATGAATTTTCATCATTTCCACATCT
CCTGTTCCCCCATACTTTTTTCATACTCTGCCTCAAGATTATGACCTCTT
CTCTGACAATTACTCTTATCTCACACACGCACACATGCACACACTCACAC
ACGCGCACACGGGAACGCGCGTGCCACAGAGAAACACAGAAAGCACTCTA
CTGAGTCCATTTAGCTCTTCTCTTATGTAAATATGCTTGGGGTTGACCAT
TTTGGCTTACCATTCATTGCAAGGCTCATGCCTGGAGAGAAGAAATTCTT
CCTCTCTCTGTACCCATTGTTTTCTTGTAGCTTTTCTTTTGGGTGTGGGG
CCGGGTGAGATTTTACTCCATTATGCTAAGGTGACCCTATCCTGACCAAC
CAAAGACTACACATGGAGGGGCCCATGGCTCCAGTTGCATATGTTGGACA
TCAATGGGAAGCGAGGCCCTTGGTCCTGAAAAGGCTCGATGCCTCAGTGT
AGGGAATGCCAGGACAGGGAAGCCTGAGTGGGTGGGTTGATGAGTAGGGG
GAGGNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNNTTTNTTTNTTTTTTNTNTTTTTTTTTTT
TTTTTTTTTNTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTT
TTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_m12.g1 MSMg01no062_m12.g1 CHROMAT_FILE:
MSMg01no062_m12.g1 PHD_FILE: MSMg01no062_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:44 2005
         (579 letters)



>mm_chr12_48230945_48231923
          Length = 979

 Score =  629 bits (325), Expect = 0.0
 Identities = 366/381 (96%), Gaps = 5/381 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcgttttttaatttaattttaaatttttcaacaatttcatacacaagaaatgaattttc 60
           |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 gtcg-tttttaacttaattttaaatttttcaataatttcatacacaagaaatgaattttc 320

                                                                       
Query: 61  atcatttccacatctcctgttcccccatacttttttcatactctgcctcaagattatgac 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 319 atcatttccacatctcctgttcccccataattttttcatactctgcctcaagattatgac 260

                                                                       
Query: 121 ctcttctctgacaattactcttatctcacacacgcacacatgcacacactcacaca--cg 178
           ||||||||||||||||||||||||||||||||| ||||||  ||||||| ||||||  ||
Sbjct: 259 ctcttctctgacaattactcttatctcacacacacacaca--cacacacacacacacgcg 202

                                                                       
Query: 179 cgcacacgggaacgcgcgtgccacagagaaacacagaaagcactctactgagtccattta 238
           ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgcacacggaaacgggcgtgacacagagaaacacagaaagcactctactgagtccattta 142

                                                                       
Query: 239 gctcttctcttatgtaaatatgcttggggttgaccattttggcttaccattcattgcaag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gctcttctcttatgtaaatatgcttggggttgaccattttggcttaccattcattgcaag 82

                                                                       
Query: 299 gctcatgcctggagagaagaaattcttcctctctctgtacccattgttttcttgtagctt 358
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gctcatgcctggagagatcaaattcttcctctctctgtacccattgttttcttgtagctt 22

                                
Query: 359 ttcttttgggtgtggggccgg 379
           |||||||||||||||||||||
Sbjct: 21  ttcttttgggtgtggggccgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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