BAC Information

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BAC

Clone NameMSMg01-063A22
Chromosome12 (Build37)
Map Location 118,660,102 - 118,660,387
singlet/doubletsinglet
Overlap genenone
Upstream geneNcapg2, Rnu7-ps1, Ptprn2, LOC627375, LOC432713, LOC100042461
Downstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063A22.T7 (MSMg01no063_a22.b1)MSMg01-063A22.TJ (MSMg01no063_a22.g1)
ACCAG288886AG288887
length721674
length of high quality
(start - end)
170 (43 - 212)287 (55 - 341)
definitionCHROMAT_FILE: MSMg01no063_a22.b1 PHD_FILE: MSMg01no063_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:16 2005CHROMAT_FILE: MSMg01no063_a22.g1 PHD_FILE: MSMg01no063_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCCGAGACCTCCACTCAGGTGAAGCTGGGATGGGATTCTTGACTACA
CCGCAGAAAAGAATTCCAGGGCAAGCCAGCCTGGAGTGACGGTGGAGTTT
CTGAAAAAGGAGATTGCATGGGATAAATAGAAAAGATAAGACAGCCATAT
GAATCTTAAGAGNAGCNAGTCACTTTTGTATTGGTGCCTTCATGGATTTT
TAGTCGGCTTTCAAGGCNNCNNNNNNNNNCCNCCACCCCTACTCCCCATT
TCCTCACCCCTCATTCTACCCTTCTTCATACTTCTCCTTTCCTCCCTGCG
CTCTTCAAACCCTTCGTTCCTGTCCCCTTTCACTCTCCACTCTTACTCCT
CCCTCCCCTCCTCTTCCCCTCCTACCTCCTCCTTCTCGTTAGCTCCTTCG
TTTCTCCTTGTCTTCCCCTCGTTCCCGTTCTTTTCTGTATGCTTCCCCCC
TTACATCATTCCTCCGCTCTCTCCTTTTTTCCTATCCTTCCCTCCCCACC
CTCCCCCTCTTTCTTTTCCACCTCCCCCCGCTACTCGTATTCTCTGCTAT
TCCCACTCTCTACTCCCTATCTTTATAAACTTTCCCGCGTTTTTTACACC
GCCCCTGTTATCTCTTCATCCCTACCTTTCCCTTATTTCCCCCTTAGCTC
CTCGTTCTCCTATGCGCTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAATGAAAAAATGTGAACAAAATGAAGAACCCCAAAATGCACCATT
AGGACAGTGTGGTGACAGTGGCCTTAAGCCAGAGAGAGTCATAAATCTGG
AGAGGGGCTAAGCAGAAATAAGGTCTGAATGTCTCTCACCTCAGTGTGTG
ATAAGTGCTAGGGAAATAGCAAGTTTTACTGGAGAATCTGGCAACCCCCT
TCTTTGCCAAACTGCCCAACATCATTCTAGTGAGGATTCATCGGTTAAAC
CCAAATTGAGGGATATTCTACAAGTAGCTAGTCAGACATGTTTTTAAATG
TCCAAGGAAAGAGTGGGCCATGCCAACAGTGAGAGGAAACTGAGGGACCA
GGACAACTAAATTCATGAAGGATCCTGGAACAGAAGACAACTCCCTGGGG
GAATAAATACAATCCAAAGTTACATTATACCATGGTTAATATTTTGTGTA
TGAGTGTAGTGTGCGCGTGTGTGTGCGCTCCCCCCTCCCCCCTTCTCCTC
TTTCTGCCTTCCGTTTATTTCCATACCCCTCCACCTCTTCCCTATCTTTC
TCCCTCTCTCTTCCTTTTTCTCGCCTCTTTTCTACTGCTTTTCCCTCTCT
CCCTCTTTACCCCTCTCTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_a22.g1 MSMg01no063_a22.g1 CHROMAT_FILE:
MSMg01no063_a22.g1 PHD_FILE: MSMg01no063_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:16 2005
         (287 letters)



>mm_chr12_118659989_118660674
          Length = 686

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%), Gaps = 3/288 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgaaaaaatgtgaacaaaatgaagaaccccaaaatgcaccattaggacagtgtggtg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caatg-aaaaatgtgaacaaaatgaagaaccccaaaatgcaccattaggacagtgtggtg 341

                                                                       
Query: 61  acagtggccttaagccagagag-agtcataaatctggagaggggctaagcagaaataagg 119
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 340 acagtggccttaagccagag-gcagtcataaatctggagaggggctaagcagaaataagg 282

                                                                       
Query: 120 tctgaatgtctctcacctcagtgtgtgataagtgctagggaaatagcaagttttactgga 179
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 281 tctgaatgtctctcacctcagtgtgtgataagtgctggggaaatagcaagttttactgga 222

                                                                       
Query: 180 gaatctggcaacccccttctttgccaaactgcccaacatcattctagtgaggattcatcg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 221 gaatctggcaacccccttctttgccaaactgcccaacatcattctagtgaggatgcatcg 162

                                                           
Query: 240 gttaaacccaaattgagggatattctacaagtagctagtcagacatgt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gttaaacccaaattgagggatattctacaagtagctagtcagacatgt 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)